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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042538 ID=TCONS_00042538|Name=TCONS_00042538|organism=Clytia hemisphaerica|type=transcript|length=1168bp
GTAATTAAAGTCTTTTGTTCCCTACGATTGACTTTTACTTGAAAAATCTC
TGAACCCCATCGAGAAGTCATCCTTCTTGAAATCGAATGTAGTTTTTTTA
CACTGTGTGCTGTACTTTAGGTGTGCTTTAAGAAAAACTCTCAGGTAAAA
AAAGGTTATTTGAAGACATGCTGACagaaattaaacaaaataaactgGGA
AATGCTCACAAGAATACAGCCAAGGAATCggaaaagaaaacttcaattAC
GATGAAATTCAGTAAAAGACTGTCCAGTAACGGCTTCAAAATTCCAAAGA
TAAAGCGCGCGGCCGCACTAGAAGATATAGAAACACCCGCTGACGCGTTT
GTTTCAGGTGATCCAGTGAAGAGTAAtcgtaaacaaaaaacaaacgaGGG
GAAGGAACCAATTGAAATCAAAGAGGGAAGAGTGAAGAAGAAAAGCCGAA
AATGTTTATCAAGTTTCTTAAGAATAAAATTTGTAAACGCGAACAGTAAA
AAGAAAATCAGGGACTCAAAAACAGACGAATAATACAATTTCATAGGGAA
ATATATCTAGTAGAATATGTATTATATTTGTAGAGTTTAGTTATTTTGAG
GTAGAAGAAAATTCGTGTTCAATTTCAAAGATCGGATTCCATTTCAATAC
TTAAgtgttttattttactttttgtagTAGTCTCAAGCATGTATAGCAAA
GAAGTCTGTTGATACTCGACCGTTCAAATCTAGAAAATAGAATGCCTTAA
ATAAGGGCAAAGCGCCACTTTAATGGAGGGATCGGTTCTAAAAAGTAATT
TCAGTTCGCTATATTATCTTATTCAGAAAAACGATTATTTTTGAACAAAA
CATGCTATACGTTCCTTGTCAAATGAAGTGAGTTTGATTTCCGTGGGACT
GAGAGAGAAATAATAACAAGTATCTACAGCCTTCTAAGATAATAAATTCG
TCACCAAGACCAAAAAAGTCTTCATCTTAATTTGTCTCGGAAAGGGCAGC
AGAATGGTTATTTCGGGACGGTAGGTCCCAATAATGGTTGTAGAGgtaat
aaaattagaaaaaaatttatgcaTCCAGAAAAATTGCGTTTAGTTGAata
actagacggttcccgtcgtcgcaaacgccggttaacggttttgcttgcac
atcaaaatcctttaaaat Run BLAST on NCBI protein sequence of TCONS_00042538-protein >TCONS_00042538-protein ID=TCONS_00042538-protein|Name=TCONS_00042538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MLTEIKQNKLGNAHKNTAKESEKKTSITMKFSKRLSSNGFKIPKIKRAAA
LEDIETPADAFVSGDPVKSNRKQKTNEGKEPIEIKEGRVKKKSRKCLSSF
LRIKFVNANSKKKIRDSKTDE Run BLAST on NCBI transcript from alignment at sc0003481:10267..11695- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042538 ID=TCONS_00042538|Name=TCONS_00042538|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at sc0003481:10267..11695- (Clytia hemisphaerica)
GTAATTAAAGTCTTTTGTTCCCTACGATTGACTTTTACTTGAAAAATCTC
TGAACCCCATCGAGAAGTCATCCTTCTTGAAATCGAATGTAGTTTTTTTA
CACTGTGTGCTGTACTTTAGGTGTGCTTTAAGAAAAACTCTCAGGTAAGT
AACTCTCTTGAGCTATTTTTTGACTACAAATTTTTCAAATTTTTCATGAA
AAGGAATTTTCATGAAGAAGAAGACCTTTGCATTGAAATTGACGTCATAA
AAATGAAGGTAACCTATTGAAAACAACGTTAAGAAACTTTTGAACAAATT
GATAGGATCGGCATTTTATAACAATCATTTGTGAATTCTAGGTAAAAAAA
GGTTATTTGAAGACATGCTGACGGAAATTAAACAAAATAAACTGGGAAAT
GCTCACAAGAATACAGCCAATNGAAGACATGCTGACAGAAATTAAACAAA
ATAAACTGGGAAATGCTCACAAGAATACAGCCAAGGAATCGGAAAAGAAA
ACTTCAATTACGATGAAATTCAGTAAAAGACTGTCCAGTAACGGCTTCAA
AATTCCAAAGATAAAGCGCGCGGCCGCACTAGAAGATATAGAAACACCCG
CTGACGCGTTTGTTTCAGGTGATCCAGTGAAGAGTAATCGTAAACAAAAA
ACAAACGAGGGGAAGGAACCAATTGAAATCAAAGAGGGAAGAGTGAAGAA
GAAAAGCCGAAAATGTTTATCAAGTTTCTTAAGAATAAAATTTGTAAACG
CGAACAGTAAAAAGAAAATCAGGGACTCAAAAACAGACGAATAATACAAT
TTCATAGGGAAATATATCTAGTAGAATATGTATTATATTTGTAGAGTTTA
GTTATTTTGAGGTAGAAGAAAATTCGTGTTCAATTTCAAAGATCGGATTC
CATTTCAATACTTAAGTGTTTTATTTTACTTTTTGTAGTAGTCTCAAGCA
TGTATAGCAAAGAAGTCTGTTGATACTCGACCGTTCAAATCTAGAAAATA
GAATGCCTTAAATAAGGGCAAAGCGCCACTTTAATGGAGGGATCGGTTCT
AAAAAGTAATTTCAGTTCGCTATATTATCTTATTCAGAAAAACGATTATT
TTTGAACAAAACATGCTATACGTTCCTTGTCAAATGAAGTGAGTTTGATT
TCCGTGGGACTGAGAGAGAAATAATAACAAGTATCTACAGCCTTCTAAGA
TAATAAATTCGTCACCAAGACCAAAAAAGTCTTCATCTTAATTTGTCTCG
GAAAGGGCAGCAGAATGGTTATTTCGGGACGGTAGGTCCCAATAATGGTT
GTAGAGGTAATAAAATTAGAAAAAAATTTATGCATCCAGAAAAATTGCGT
TTAGTTGAATAACTAGACGGTTCCCGTCGTCGCAAACGCCGGTTAACGGT
TTTGCTTGCACATCAAAATCCTTTAAAAT Coding sequence (CDS) from alignment at sc0003481:10267..11695- >TCONS_00042538 ID=TCONS_00042538|Name=TCONS_00042538|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0003481:10267..11695- (Clytia hemisphaerica)
ATGCTGACAGAAATTAAACAAAATAAACTGGGAAATGCTCACAAGAATAC
AGCCAAGGAATCGGAAAAGAAAACTTCAATTACGATGAAATTCAGTAAAA
GACTGTCCAGTAACGGCTTCAAAATTCCAAAGATAAAGCGCGCGGCCGCA
CTAGAAGATATAGAAACACCCGCTGACGCGTTTGTTTCAGGTGATCCAGT
GAAGAGTAATCGTAAACAAAAAACAAACGAGGGGAAGGAACCAATTGAAA
TCAAAGAGGGAAGAGTGAAGAAGAAAAGCCGAAAATGTTTATCAAGTTTC
TTAAGAATAAAATTTGTAAACGCGAACAGTAAAAAGAAAATCAGGGACTC
AAAAACAGACGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042538-exon-sc0003481-1575043694:11552..11695 | TCONS_00042538-exon-sc0003481-1575043694:11552..11695 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1575043694:11332..11354 | TCONS_00042538-exon-sc0003481-1575043694:11332..11354 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1575043694:10267..11267 | TCONS_00042538-exon-sc0003481-1575043694:10267..11267 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1510915933:11552..11695 | TCONS_00042538-exon-sc0003481-1510915933:11552..11695 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1510915933:11332..11354 | TCONS_00042538-exon-sc0003481-1510915933:11332..11354 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1510915933:10267..11267 | TCONS_00042538-exon-sc0003481-1510915933:10267..11267 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1491911889:11552..11695 | TCONS_00042538-exon-sc0003481-1491911889:11552..11695 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1491911889:11332..11354 | TCONS_00042538-exon-sc0003481-1491911889:11332..11354 | Clytia hemisphaerica | exon |
| TCONS_00042538-exon-sc0003481-1491911889:10267..11267 | TCONS_00042538-exon-sc0003481-1491911889:10267..11267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003481 | supercontig | sc0003481:10267..11695 - |
Blast
The following BLAST results are available for this feature:
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