TCONS_00042537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042537
Unique NameTCONS_00042537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042537 ID=TCONS_00042537|Name=TCONS_00042537|organism=Clytia hemisphaerica|type=transcript|length=272bp
TTTGACAGCATTATCGATGATTTGTGTTTTGCCTTTGGAAGAGACTTATA
AGAAGAAACTGGAGCAAGAATAAAGATTTAAAGTTGACTGGCCAAAAACT
TCGGACTGTTACAATACTTCACTGTTATAActagaatagaatagaataga
atagaatttcaaaaaaaaaaaaaaaatttgaaataataaagTTAACAATA
TCACATGTCAAAAAGAGTTTTAATTTTCTACCATGCTCTACCAAAATTCC
TTTTAACCAACCCTGCTTTAAC
Run BLAST on NCBI

transcript from alignment at sc0003480:13659..13930

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042537 ID=TCONS_00042537|Name=TCONS_00042537|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0003480:13659..13930 (Clytia hemisphaerica)
GTTAAAGCAGGGTTGGTTAAAAGGAATTTTGGTAGAGCATGGTAGAAAAT
TAAAACTCTTTTTGACATGTGATATTGTTAActttattatttcaaatttt
ttttttttttttgaaattctattctattctattctattctagTTATAACA
GTGAAGTATTGTAACAGTCCGAAGTTTTTGGCCAGTCAACTTTAAATCTT
TATTCTTGCTCCAGTTTCTTCTTATAAGTCTCTTCCAAAGGCAAAACACA
AATCATCGATAATGCTGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026360XLOC_026360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042537-exon-sc0003480-1491911889:13659..13930TCONS_00042537-exon-sc0003480-1491911889:13659..13930Clytia hemisphaericaexon
TCONS_00042537-exon-sc0003480-1510915933:13659..13930TCONS_00042537-exon-sc0003480-1510915933:13659..13930Clytia hemisphaericaexon
TCONS_00042537-exon-sc0003480-1575043694:13659..13930TCONS_00042537-exon-sc0003480-1575043694:13659..13930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003480supercontigsc0003480:13659..13930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10193	3.22367	2.49532	1.22064	0	1.17427	0	0	0	1.72529	0	0.36694	0	0.380541	0	0	0.827215	0.847868	0	0	1.59811	0	5.68553	6.31763	0	1.05588	5.28838	0	0.611528	3.7383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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