TCONS_00042531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042531
Unique NameTCONS_00042531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042531 ID=TCONS_00042531|Name=TCONS_00042531|organism=Clytia hemisphaerica|type=transcript|length=897bp
CACAAGGTATGTACATTTCTGAACGAAAACTTCTAAATCTTATCCTTCAT
TTcgtgattattttttaaatgtaactaattgaatatttttcatgacTATT
TAGATCAAAGttggatttcaaataaaaaacatccCCAAGCAACACAGCCT
TCCCAAGCTTTAAAATCACAAGATCAAAGTTCgagttcaaataaaaaaca
tccCCAAGTAACACAGCCTTCCCAAGCTTTAAAATCACAAGATGAAAGTT
CGAGTAATTTCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGAC
GATGTTGAATGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTaTAC
AAATTCAGTTTCTTCAGATTCAGCTTCAGAGACAAGTGACACTACAGAGA
CAGCATCAATATTAGGATACGAAGATTCGGAGAAAGACGAAGAAGAAATA
GAAGTACAAGAATCAGCGTATGATATTCCTCTGGTACCGTTTAAAAACTT
GTCAACAAGaggaaaacaaactttttcatgGCTAATAGGAACCGAACTTG
CGCTAGACAGAATGAACCAGTGTTGTGATATTGAAACAAGTGCCATTATT
CCTTTCACGAAAATGAAACACAAAGATTCTTTCCGTGATCCTTCTGTGGA
CTTAGAAATCGTAAAAGACCTTGTTTCAGACGCAGTGTataaaataatag
aaaattaTCAATCGATgtgcaaaaacaaaagaactggACCTGTGGAGATT
GCCGTAGAAAAGTCGCTCACGGGATCAGTTGTGATAGATGCCACCAATGG
TATCATTTCAAATGCTCCAAATTGAAAACTGCCAACAACATTGGAAGTGA
CGAGATTTGGATTTGCAATGATTGTAAACAAAATCACGAGATCGGTA
Run BLAST on NCBI

transcript from alignment at sc0003478:6872..8645-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042531 ID=TCONS_00042531|Name=TCONS_00042531|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0003478:6872..8645- (Clytia hemisphaerica)
CACAAGGTATGTACATTTCTGAACGAAAACTTCTAAATCTTATCCTTCAT
TTCGTGATTATTTTTTAAATGTAACTAATTGAATATTTTTCATGACTATT
TAGATCAAAGTTGGATTTCAAATAAAAAACATCCCCAAGCAACACAGCCT
TCCCAAGCTTTAAAATCACAAGGTATGTACATTTCTGAACGAAAACTTCT
AAATCCTATCCTTCATTTCGTGATTATTTTCTAAATGTAACTAATTGAAT
ATTTTTCATGACTATTTAGATCAAAGTTCGAGTTCAAATAAAAAACATCC
CCAAGTAACACAGCCTTCCCAAGCTTTAAAATCACAAGGTATGTACTTTT
CTGAACGAAACCTTCTAAATCTTATCCTTCATTTCGGGATTATTTTCTAA
ATGATGTAACTAATTTAATATTTTCCATGACTATTTAGATGAAAGTTCGA
GTAATTTCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGAT
GTTGAATGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTGTAAGTT
TTAGTGTATAAGGTTTTAATTTCGATACTGGACAAATAGTTTCAAGCCAG
GTAAGTCATCGTAAGGCCATGTTCCGTTCCGTTCCAAAACAAAAGAAGCC
GTTTTATTGGCTAATTGTAGCGGTTACGACAATTATAACCAACAAAACAG
AACCATTATGTGTCAGCAGGCCTGAATTATGAAAATTCTAGTTTGACATT
ACATATGATATGACTAATGTTTTAAATTTCTAGATACAAATTCAGTTTCT
TCAGATTCAGCTTCAGAGACAAGTGACACTACAGAGACAGCATCAATATT
AGGTAAAAGGAAGCTCTGTTTTTATAATAATTATTATCTTTTGATTACCA
ATTTTTTTCAGTTTGATGTTACTATGTAATGCTATTATTAAATTCAAATT
TCATAAATTTAGACATTCTTAATTTTTCATACCAACTTCAGGATACGAAG
ATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGAT
ATTCCTCTGGGTAAATAAAGTTTTTTCGTTTGAATTGTAACTTGGTTATC
ATTTGCACGATTATCCTAACTCGAACACTTTTAAAAAATTTATACAATTT
AAGTCGTGCGACTGATGAAATCACGAAGCTAGATGGCAAAATGAAGATTC
ATCTCCAATCAATTGCATATCAGTAGAGTCAGGCATATGGGAATCTACAA
TTCAATGTAAATCTCAACAAGTCATAGCCTCTAATGTCAATATTTTGCAA
CAAAAAATAATTAAAACGACTACGTTATTTCAGACTTTCGTGTTCCTTCT
TTTTTTATTAGTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTT
TTTCATGGCTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGT
TGTGATATTGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAA
AGATTCTTTCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTG
TTTCAGACGCAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAA
AACAAAAGAACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGG
ATCAGTTGTGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATT
GAAAACTGCCAACAACATTGGAAGTGACGAGATTTGGATTTGCAATGATT
GTAAACAAAATCACGAGATCGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026355XLOC_026355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042531-exon-sc0003478-1575043694:8474..8645TCONS_00042531-exon-sc0003478-1575043694:8474..8645Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1575043694:8308..8376TCONS_00042531-exon-sc0003478-1575043694:8308..8376Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1575043694:8103..8207TCONS_00042531-exon-sc0003478-1575043694:8103..8207Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1575043694:7794..7862TCONS_00042531-exon-sc0003478-1575043694:7794..7862Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1575043694:7586..7654TCONS_00042531-exon-sc0003478-1575043694:7586..7654Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1575043694:6872..7284TCONS_00042531-exon-sc0003478-1575043694:6872..7284Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:8474..8645TCONS_00042531-exon-sc0003478-1510915933:8474..8645Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:8308..8376TCONS_00042531-exon-sc0003478-1510915933:8308..8376Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:8103..8207TCONS_00042531-exon-sc0003478-1510915933:8103..8207Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:7794..7862TCONS_00042531-exon-sc0003478-1510915933:7794..7862Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:7586..7654TCONS_00042531-exon-sc0003478-1510915933:7586..7654Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1510915933:6872..7284TCONS_00042531-exon-sc0003478-1510915933:6872..7284Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:8474..8645TCONS_00042531-exon-sc0003478-1491911889:8474..8645Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:8308..8376TCONS_00042531-exon-sc0003478-1491911889:8308..8376Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:8103..8207TCONS_00042531-exon-sc0003478-1491911889:8103..8207Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:7794..7862TCONS_00042531-exon-sc0003478-1491911889:7794..7862Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:7586..7654TCONS_00042531-exon-sc0003478-1491911889:7586..7654Clytia hemisphaericaexon
TCONS_00042531-exon-sc0003478-1491911889:6872..7284TCONS_00042531-exon-sc0003478-1491911889:6872..7284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003478supercontigsc0003478:6872..8645 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.25064	7.89482	3.69377	2.11351	0	0	0.397781	0.245412	0.173816	0	0	0.377773	0	0.249312	0.292812	0.251385	0.735505	0.941309	1.26078	0.630975	0.398859	0.288447	0.709501	1.07507	0.110729	0	0	0	0.226308	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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