TCONS_00042530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042530
Unique NameTCONS_00042530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042530 ID=TCONS_00042530|Name=TCONS_00042530|organism=Clytia hemisphaerica|type=transcript|length=723bp
CAAAGttggatttcaaataaaaaacatccCCAAGCAACACAGCCTTCCCA
AGCTTTAAAATCACAAGATGAAAGTTCGAGTAATTTCCCACCTGAGAGAA
AGTCTAGTGAACCGCATGTATTGGACGATGTTGAATGGGAGCGAAGCCTG
CAATGGATTCGAGAAGGACATTaTACAAATTCAGTTTCTTCAGATTCAGC
TTCAGAGACAAGTGACACTACAGAGACAGCATCAATATTAGGATACGAAG
ATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGAT
ATTCCTCTGGTACCGTTTAAAAACTTGTCAACAAGaggaaaacaaacttt
ttcatgGCTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTT
GTGATATTGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAA
GATTCTTTCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGT
TTCAGACGCAGTGTataaaataatagaaaattaTCAATCGATgtgcaaaa
acaaaagaactggACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGA
TCAGTTGTGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTG
AAAACTGCCAACAACATTGGAAGTGACGAGATTTGGATTTGCAATGATTG
TAAACAAAATCACGAGATCGGTA
Run BLAST on NCBI

protein sequence of TCONS_00042530-protein

>TCONS_00042530-protein ID=TCONS_00042530-protein|Name=TCONS_00042530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
QSWISNKKHPQATQPSQALKSQDESSSNFPPERKSSEPHVLDDVEWERSL
QWIREGHYTNSVSSDSASETSDTTETASILGYEDSEKDEEEIEVQESAYD
IPLVPFKNLSTRGKQTFSWLIGTELALDRMNQCCDIETSAIIPFTKMKHK
DSFRDPSVDLEIVKDLVSDAVYKIIENYQSMCKNKRTGPVEIAVEKSLTG
SVVIDATNGIISNAPN
Run BLAST on NCBI

transcript from alignment at sc0003478:6872..8540-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042530 ID=TCONS_00042530|Name=TCONS_00042530|organism=Clytia hemisphaerica|type=transcript|length=1669bp|location=Sequence derived from alignment at sc0003478:6872..8540- (Clytia hemisphaerica)
CAAAGTTGGATTTCAAATAAAAAACATCCCCAAGCAACACAGCCTTCCCA
AGCTTTAAAATCACAAGGTATGTACATTTCTGAACGAAAACTTCTAAATC
CTATCCTTCATTTCGTGATTATTTTCTAAATGTAACTAATTGAATATTTT
TCATGACTATTTAGATCAAAGTTCGAGTTCAAATAAAAAACATCCCCAAG
TAACACAGCCTTCCCAAGCTTTAAAATCACAAGGTATGTACTTTTCTGAA
CGAAACCTTCTAAATCTTATCCTTCATTTCGGGATTATTTTCTAAATGAT
GTAACTAATTTAATATTTTCCATGACTATTTAGATGAAAGTTCGAGTAAT
TTCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGA
ATGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTGTAAGTTTTAGT
GTATAAGGTTTTAATTTCGATACTGGACAAATAGTTTCAAGCCAGGTAAG
TCATCGTAAGGCCATGTTCCGTTCCGTTCCAAAACAAAAGAAGCCGTTTT
ATTGGCTAATTGTAGCGGTTACGACAATTATAACCAACAAAACAGAACCA
TTATGTGTCAGCAGGCCTGAATTATGAAAATTCTAGTTTGACATTACATA
TGATATGACTAATGTTTTAAATTTCTAGATACAAATTCAGTTTCTTCAGA
TTCAGCTTCAGAGACAAGTGACACTACAGAGACAGCATCAATATTAGGTA
AAAGGAAGCTCTGTTTTTATAATAATTATTATCTTTTGATTACCAATTTT
TTTCAGTTTGATGTTACTATGTAATGCTATTATTAAATTCAAATTTCATA
AATTTAGACATTCTTAATTTTTCATACCAACTTCAGGATACGAAGATTCG
GAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGATATTCC
TCTGGGTAAATAAAGTTTTTTCGTTTGAATTGTAACTTGGTTATCATTTG
CACGATTATCCTAACTCGAACACTTTTAAAAAATTTATACAATTTAAGTC
GTGCGACTGATGAAATCACGAAGCTAGATGGCAAAATGAAGATTCATCTC
CAATCAATTGCATATCAGTAGAGTCAGGCATATGGGAATCTACAATTCAA
TGTAAATCTCAACAAGTCATAGCCTCTAATGTCAATATTTTGCAACAAAA
AATAATTAAAACGACTACGTTATTTCAGACTTTCGTGTTCCTTCTTTTTT
TATTAGTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCA
TGGCTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGA
TATTGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATT
CTTTCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCA
GACGCAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAA
AAGAACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAG
TTGTGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAAAA
CTGCCAACAACATTGGAAGTGACGAGATTTGGATTTGCAATGATTGTAAA
CAAAATCACGAGATCGGTA

Coding sequence (CDS) from alignment at sc0003478:6872..8540-

>TCONS_00042530 ID=TCONS_00042530|Name=TCONS_00042530|organism=Clytia hemisphaerica|type=CDS|length=3255bp|location=Sequence derived from alignment at sc0003478:6872..8540- (Clytia hemisphaerica)
TACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATGGCTA
ATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATATTGA
AACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCTTTCC
GTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGACGCA
GTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAAGAAC
TGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTTGTGA
TAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATACGAAG
ATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGAT
ATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGACAAG
TGACACTACAGAGACAGCATCAATATTAGATGAAAGTTCGAGTAATTTCC
CACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGAATGG
GAGCGAAGCCTGCAATGGATTCGAGAAGGACATTCAAAGTTGGATTTCAA
ATAAAAAACATCCCCAAGCAACACAGCCTTCCCAAGCTTTAAAATCACAA
GTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATGGCT
AATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATATTG
AAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCTTTC
CGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGACGC
AGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAAGAA
CTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTTGTG
ATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATACGAA
GATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGA
TATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGACAA
GTGACACTACAGAGACAGCATCAATATTAGATGAAAGTTCGAGTAATTTC
CCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGAATG
GGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTCAAAGTTGGATTTCA
AATAAAAAACATCCCCAAGCAACACAGCCTTCCCAAGCTTTAAAATCACA
AGTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATGGC
TAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATATT
GAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCTTT
CCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGACG
CAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAAGA
ACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTTGT
GATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATACGA
AGATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATG
ATATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGACA
AGTGACACTACAGAGACAGCATCAATATTAGATGAAAGTTCGAGTAATTT
CCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGAAT
GGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTCAAAGTTGGATTTC
AAATAAAAAACATCCCCAAGCAACACAGCCTTCCCAAGCTTTAAAATCAC
AAGTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATGG
CTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATAT
TGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCTT
TCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGAC
GCAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAAG
AACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTTG
TGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATACG
AAGATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTAT
GATATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGAC
AAGTGACACTACAGAGACAGCATCAATATTAGATGAAAGTTCGAGTAATT
TCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGAA
TGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTCAAAGTTGGATTT
CAAATAAAAAACATCCCCAAGCAACACAGCCTTCCCAAGCTTTAAAATCA
CAAGTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATG
GCTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATA
TTGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCT
TTCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGA
CGCAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAA
GAACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTT
GTGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATAC
GAAGATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTA
TGATATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGA
CAAGTGACACTACAGAGACAGCATCAATATTAGATGAAAGTTCGAGTAAT
TTCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGA
ATGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTCAAAGTTGGATT
TCAAATAAAAAACATCCCCAAGCAACACAGCCTTCCCAAGCTTTAAAATC
ACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026355XLOC_026355Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042530-proteinTCONS_00042530-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042530-exon-sc0003478-1575043694:8474..8540TCONS_00042530-exon-sc0003478-1575043694:8474..8540Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1575043694:8103..8207TCONS_00042530-exon-sc0003478-1575043694:8103..8207Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1575043694:7794..7862TCONS_00042530-exon-sc0003478-1575043694:7794..7862Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1575043694:7586..7654TCONS_00042530-exon-sc0003478-1575043694:7586..7654Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1575043694:6872..7284TCONS_00042530-exon-sc0003478-1575043694:6872..7284Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1510915933:8474..8540TCONS_00042530-exon-sc0003478-1510915933:8474..8540Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1510915933:8103..8207TCONS_00042530-exon-sc0003478-1510915933:8103..8207Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1510915933:7794..7862TCONS_00042530-exon-sc0003478-1510915933:7794..7862Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1510915933:7586..7654TCONS_00042530-exon-sc0003478-1510915933:7586..7654Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1510915933:6872..7284TCONS_00042530-exon-sc0003478-1510915933:6872..7284Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1491911889:8474..8540TCONS_00042530-exon-sc0003478-1491911889:8474..8540Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1491911889:8103..8207TCONS_00042530-exon-sc0003478-1491911889:8103..8207Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1491911889:7794..7862TCONS_00042530-exon-sc0003478-1491911889:7794..7862Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1491911889:7586..7654TCONS_00042530-exon-sc0003478-1491911889:7586..7654Clytia hemisphaericaexon
TCONS_00042530-exon-sc0003478-1491911889:6872..7284TCONS_00042530-exon-sc0003478-1491911889:6872..7284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003478supercontigsc0003478:6872..8540 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.760851	0	0.186162	0.220662	0	0.0868967	0	0.0720458	0	0	0.18362	0	0	0	0	0.439522	0	0	0	0.00452082	0	0	0	0.132277	0.094644	0	0.0801323	0.156107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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