TCONS_00042529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042529
Unique NameTCONS_00042529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042529 ID=TCONS_00042529|Name=TCONS_00042529|organism=Clytia hemisphaerica|type=transcript|length=578bp
gcggctttaaacatgtgAATGAATTCGGACGAAAATCGAATAGCCAGAAG
AATCCTGAAAGAGCAAATAAACTCAGGAAAGGAAAACAACTGGTGGGGAG
AAgtgaaaaaagtgttaaaagacTTCCAGATGGACGAAATAGAGGTAGAG
GAGATATCAAAAACGAAATGGAAAGCAACGACAATCAGAAGAATGAAGAA
CTTGCTAAACGAAAGAGTAAAATCAAGCGAAAAAACAAAAGTACGATTCT
TAAAAGACTGGAACGAGAAAGATTACGTGACAAAACTTACTAAAGCCGAC
TCGAAATTGATAATGGACGCGAGATTGAATATGATAGAAATaggtgaaaa
ttttaaaggcaaaaaaacaattacaaataaATGTCCGGTTTACGACGATG
TACTCACTACGGAACATTTAGCTAATTACGACGACGGGTGTACAAACGTA
GTAGCTGACATAGGggatgaaaatattgaaaatttaaaaaatatatgttt
AAAAATTAAGACTTTTTTGCAGAATTATGAACATATTATATACAAGTAGG
TGATCCACGTTTAAGAATTGCAAATTAT
Run BLAST on NCBI

protein sequence of TCONS_00042529-protein

>TCONS_00042529-protein ID=TCONS_00042529-protein|Name=TCONS_00042529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MNSDENRIARRILKEQINSGKENNWWGEVKKVLKDFQMDEIEVEEISKTK
WKATTIRRMKNLLNERVKSSEKTKVRFLKDWNEKDYVTKLTKADSKLIMD
ARLNMIEIGENFKGKKTITNKCPVYDDVLTTEHLANYDDGCTNVVADIGD
ENIENLKNICLKIKTFLQNYEHIIYK
Run BLAST on NCBI

transcript from alignment at sc0003478:1932..2539-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042529 ID=TCONS_00042529|Name=TCONS_00042529|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0003478:1932..2539- (Clytia hemisphaerica)
GCGGCTTTAAACATGTGAATGAATTCGGACGAAAATCGAATAGCCAGAAG
AATCCTGAAAGAGCAAATAAACTCAGGAAAGGAAAACAACTGGTGGGGAG
AAGTGAAAAAAGTGTTAAAAGACTTCCAGATGGACGAAATAGAGGTAGAG
GAGATATCAAAAACGAAATGGAAAGCAACGACAATCAGAAGAATGAAGGN
GAAAGCAACGACAATCAAAAGAATGAAGAACTTGCTAAACGAAAGAGTAA
AATCAAGCGAAAAAACAAAAGTACGATTCTTAAAAGACTGGAACGAGAAA
GATTACGTGACAAAACTTACTAAAGCCGACTCGAAATTGATAATGGACGC
GAGATTGAATATGATAGAAATAGGTGAAAATTTTAAAGGCAAAAAAACAA
TTACAAATAAATGTCCGGTTTACGACGATGTACTCACTACGGAACATTTA
GCTAATTACGACGACGGGTGTACAAACGTAGTAGCTGACATAGGGGATGA
AAATATTGAAAATTTAAAAAATATATGTTTAAAAATTAAGACTTTTTTGC
AGAATTATGAACATATTATATACAAGTAGGTGATCCACGTTTAAGAATTG
CAAATTAT

Coding sequence (CDS) from alignment at sc0003478:1932..2539-

>TCONS_00042529 ID=TCONS_00042529|Name=TCONS_00042529|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0003478:1932..2539- (Clytia hemisphaerica)
AACTTGCTAAACGAAAGAGTAAAATCAAGCGAAAAAACAAAAGTACGATT
CTTAAAAGACTGGAACGAGAAAGATTACGTGACAAAACTTACTAAAGCCG
ACTCGAAATTGATAATGGACGCGAGATTGAATATGATAGAAATAGGTGAA
AATTTTAAAGGCAAAAAAACAATTACAAATAAATGTCCGGTTTACGACGA
TGTACTCACTACGGAACATTTAGCTAATTACGACGACGGGTGTACAAACG
TAGTAGCTGACATAGGGGATGAAAATATTGAAAATTTAAAAAATATATGT
TTAAAAATTAAGACTTTTTTGCAGAATTATGAACATATTATATACAAGTA
GATGAATTCGGACGAAAATCGAATAGCCAGAAGAATCCTGAAAGAGCAAA
TAAACTCAGGAAAGGAAAACAACTGGTGGGGAGAAGTGAAAAAAGTGTTA
AAAGACTTCCAGATGGACGAAATAGAGGTAGAGGAGATATCAAAAACGAA
ATGGAAAGCAACGACAATCAGAAGAATGAAGAACTTGCTAAACGAAAGAG
TAAAATCAAGCGAAAAAACAAAAGTACGATTCTTAAAAGACTGGAACGAG
AAAGATTACGTGACAAAACTTACTAAAGCCGACTCGAAATTGATAATGGA
CGCGAGATTGAATATGATAGAAATAGGTGAAAATTTTAAAGGCAAAAAAA
CAATTACAAATAAATGTCCGGTTTACGACGATGTACTCACTACGGAACAT
TTAGCTAATTACGACGACGGGTGTACAAACGTAGTAGCTGACATAGGGGA
TGAAAATATTGAAAATTTAAAAAATATATGTTTAAAAATTAAGACTTTTT
TGCAGAATTATGAACATATTATATACAAGTAGATGAATTCGGACGAAAAT
CGAATAGCCAGAAGAATCCTGAAAGAGCAAATAAACTCAGGAAAGGAAAA
CAACTGGTGGGGAGAAGTGAAAAAAGTGTTAAAAGACTTCCAGATGGACG
AAATAGAGGTAGAGGAGATATCAAAAACGAAATGGAAAGCAACGACAATC
AGAAGAATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026354XLOC_026354Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042529-proteinTCONS_00042529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042529-exon-sc0003478-1575043694:2342..2539TCONS_00042529-exon-sc0003478-1575043694:2342..2539Clytia hemisphaericaexon
TCONS_00042529-exon-sc0003478-1575043694:1932..2311TCONS_00042529-exon-sc0003478-1575043694:1932..2311Clytia hemisphaericaexon
TCONS_00042529-exon-sc0003478-1510915933:2342..2539TCONS_00042529-exon-sc0003478-1510915933:2342..2539Clytia hemisphaericaexon
TCONS_00042529-exon-sc0003478-1510915933:1932..2311TCONS_00042529-exon-sc0003478-1510915933:1932..2311Clytia hemisphaericaexon
TCONS_00042529-exon-sc0003478-1491911889:2342..2539TCONS_00042529-exon-sc0003478-1491911889:2342..2539Clytia hemisphaericaexon
TCONS_00042529-exon-sc0003478-1491911889:1932..2311TCONS_00042529-exon-sc0003478-1491911889:1932..2311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003478supercontigsc0003478:1932..2539 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.67302	1.50011	1.41519	0.745525	4.66768	3.17618	3.95553	3.70312	1.37734	1.20428	0.389634	2.1771	1.0231	0.531247	1.63784	2.0506	2.59834	1.92343	1.63528	2.45985	1.30143	1.63232	1.9843	1.60357	0.206455	0.276384	1.05468	1.26628	0.640285	1.08725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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