|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042527 ID=TCONS_00042527|Name=TCONS_00042527|organism=Clytia hemisphaerica|type=transcript|length=1182bp
ATTGAATGGAGAAAGTTAATTATGTACTTAAtgtatttcttaaattttcc
attttactTCAGGGGTATTACTGCTTCCTCACCTGTTGCAGTCCTCAATG
CAGTTTTGAACAATCAATCTAAAGGTGTAAATCCTCTTTTTTACAAATGT
CCATCTGGAGCTTCATCTTATGGCCTTGTGAGGACAAGAAAAAGACCGGG
CACTACCATGACCAAAGCACCTCCTTATACTCCTCCAAAACAAAATCAGA
TAACAAGAGAAGTTAAAGAGCTACCCAAGAGGGAGGCAAGAGtcacaaaa
aagttgaatccACCCACTGCTCAAATTTCCCGGTCACTGAATCCTCCAGG
AAAGGCGTTTCCTGCTCCATCTGGTCTAAGAGTGAAGAAGCCGTTGATAC
CTCCAGGTGAGAAGACACCAGTCACTAATATCACCAACCGATACACACCA
CCCCTTGGATCGCTTTCCAAAGCTGCCTACCTTGAGCGACTGAAACAGCA
GCCCCAACACAGGAGGATGATGGGACCAACCACATCAGCTTTGGTTAGAC
CTTCACCTCCCTTTTCAAGGCCACCACCTGGAGCAGCCCTGAGAGTGATG
CCACCAAAGAAACGAGTCAAGATTGACAAAGATGAGAATGATTCTGATAG
TAGCACTCAATCCAAAAATGACGACGAACCTATCAGGAAGCGTCCTTTGG
TTACCAAAATCAAGGTACaatgcatattttaaaataaattttcatgtttc
catttagtatatgtaatcacatgataacgagtgcaattcgaatataattg
cacgagtgcaattttcgaattgtacgagttattatgtgattacgagctaa
tcgcacaatggctgtcactactttttcccagttaggaaagtaaattacag
aaattagactgagagttttatatttttctcttctctttatgtctttcttt
tattgttgtttattgattttctctctcacaaaataaatttcgaatgcaat
taaaacgttcgatgcaaaaaaaatgtaagaaaaaatattaaaatcaattt
tgtaaacattggcgcggcattggagagtgtgattaacgattaattgctct
ctacaggatgcaattaacgattagattacttgctctctttgagggcgtgc
caaataagaaaaaataacccatcgtgcgatta Run BLAST on NCBI protein sequence of TCONS_00042527-protein >TCONS_00042527-protein ID=TCONS_00042527-protein|Name=TCONS_00042527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
IEWRKLIMYLMYFLNFPFYFRGITASSPVAVLNAVLNNQSKGVNPLFYKC
PSGASSYGLVRTRKRPGTTMTKAPPYTPPKQNQITREVKELPKREARVTK
KLNPPTAQISRSLNPPGKAFPAPSGLRVKKPLIPPGEKTPVTNITNRYTP
PLGSLSKAAYLERLKQQPQHRRMMGPTTSALVRPSPPFSRPPPGAALRVM
PPKKRVKIDKDENDSDSSTQSKNDDEPIRKRPLVTKIKVQCIF Run BLAST on NCBI transcript from alignment at sc0003475:1678..3305+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042527 ID=TCONS_00042527|Name=TCONS_00042527|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at sc0003475:1678..3305+ (Clytia hemisphaerica)
ATTGAATGGAGAAAGTTAATTATGTACTTAAtgtatttcttaaattttcc
attttactTCAGGGGTATTACTGCTTCCTCACCTGTTGCAGTCCTCAATG
CAGTTTTGAACAATCAATCTAAAGGTGTAAATCCTCTTTTTTACAAATGT
CCATCTGGAGCTTCATCTTATGGCCTTGTGGTAAGTTCAATTTTGCCTGG
TATGATGGGTACATTTATTATTCATTTGATAAAGTTTTATATGCTTATTT
AAGAACGTATTATTGATGCTGTCTAAAACTTAGTGACTGGATATTTTGGT
AATCAAGAAGTGAAGATTAGACCCCCAGTCTCAGTGATATCtaaatttta
cattttgtttattttgtatataCTAACATGCAAGATTGGACAACTTTCAC
TTTCTCTATTTCAGAGGACAAGAAAAAGACCGGGCACTACCATGACCAAA
GCACCTCCTTATACTCCTCCAAAACAAAATCAGATAACAAGAGAAGTTAA
AGAGCTACCCAGTAAGTCACAACACATCTtacaaaattttgttgaatttt
aaaaTGCTTCACTGCAAAGTATATATATACCCCAATTTAGGTCAGATGAG
TGATATCATTTATTATAATTACGTTAAGGCAACACCTGCTCAGAACTCCA
TGTTCAACGCTAAGTGTCTAATAAGGCTAATAAGTATCACAAACAAAAAA
TTGGCCCTCTTTGTTACATTTAGAGAGGGAGGCAAGAGtcacaaaaaagt
tgaatccACCCACTGCTCAAATTTCCCGGTCACTGAATCCTCCAGGAAAG
GCGTTTCCTGCTCCATCTGGTCTAAGAGTGAAGAAGCCGTTGATACCTCC
AGGTGAGAAGACACCAGTCACTAATATCACCAACCGATACACACCACCCC
TTGGATCGCTTTCCAAAGCTGCCTACCTTGAGCGACTGAAACAGCAGCCC
CAACACAGGAGGATGATGGGACCAACCACATCAGCTTTGGTTAGACCTTC
ACCTCCCTTTTCAAGGCCACCACCTGGAGCAGCCCTGAGAGTGATGCCAC
CAAAGAAACGAGTCAAGATTGACAAAGATGAGAATGATTCTGATAGTAGC
ACTCAATCCAAAAATGACGACGAACCTATCAGGAAGCGTCCTTTGGTTAC
CAAAATCAAGGTACaatgcatattttaaaataaattttcatgtttccatt
tagtatatgtaatcacatgataacgagtgcaattcgaatataattgcacg
agtgcaattttcgaattgtacgagttattatgtgattacgagctaatcgc
acaatggctgtcactactttttcccagttaggaaagtaaattacagaaat
tagactgagagttttatatttttctcttctctttatgtctttcttttatt
gttgtttattgattttctctctcacaaaataaatttcgaatgcaattaaa
acgttcgatgcaaaaaaaatgtaagaaaaaatattaaaatcaattttgta
aacattggcgcggcattggagagtgtgattaacgattaattgctctctac
aggatgcaattaacgattagattacttgctctctttgagggcgtgccaaa
taagaaaaaataacccatcgtgcgatta Coding sequence (CDS) from alignment at sc0003475:1678..3305+ >TCONS_00042527 ID=TCONS_00042527|Name=TCONS_00042527|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0003475:1678..3305+ (Clytia hemisphaerica)
ATTGAATGGAGAAAGTTAATTATGTACTTAAtgtatttcttaaattttcc
attttactTCAGGGGTATTACTGCTTCCTCACCTGTTGCAGTCCTCAATG
CAGTTTTGAACAATCAATCTAAAGGTGTAAATCCTCTTTTTTACAAATGT
CCATCTGGAGCTTCATCTTATGGCCTTGTGAGGACAAGAAAAAGACCGGG
CACTACCATGACCAAAGCACCTCCTTATACTCCTCCAAAACAAAATCAGA
TAACAAGAGAAGTTAAAGAGCTACCCAAGAGGGAGGCAAGAGtcacaaaa
aagttgaatccACCCACTGCTCAAATTTCCCGGTCACTGAATCCTCCAGG
AAAGGCGTTTCCTGCTCCATCTGGTCTAAGAGTGAAGAAGCCGTTGATAC
CTCCAGGTGAGAAGACACCAGTCACTAATATCACCAACCGATACACACCA
CCCCTTGGATCGCTTTCCAAAGCTGCCTACCTTGAGCGACTGAAACAGCA
GCCCCAACACAGGAGGATGATGGGACCAACCACATCAGCTTTGGTTAGAC
CTTCACCTCCCTTTTCAAGGCCACCACCTGGAGCAGCCCTGAGAGTGATG
CCACCAAAGAAACGAGTCAAGATTGACAAAGATGAGAATGATTCTGATAG
TAGCACTCAATCCAAAAATGACGACGAACCTATCAGGAAGCGTCCTTTGG
TTACCAAAATCAAGGTACaatgcatattttaaATTGAATGGAGAAAGTTA
ATTATGTACTTAAtgtatttcttaaattttccattttactTCAGGGGTAT
TACTGCTTCCTCACCTGTTGCAGTCCTCAATGCAGTTTTGAACAATCAAT
CTAAAGGTGTAAATCCTCTTTTTTACAAATGTCCATCTGGAGCTTCATCT
TATGGCCTTGTGAGGACAAGAAAAAGACCGGGCACTACCATGACCAAAGC
ACCTCCTTATACTCCTCCAAAACAAAATCAGATAACAAGAGAAGTTAAAG
AGCTACCCAAGAGGGAGGCAAGAGtcacaaaaaagttgaatccACCCACT
GCTCAAATTTCCCGGTCACTGAATCCTCCAGGAAAGGCGTTTCCTGCTCC
ATCTGGTCTAAGAGTGAAGAAGCCGTTGATACCTCCAGGTGAGAAGACAC
CAGTCACTAATATCACCAACCGATACACACCACCCCTTGGATCGCTTTCC
AAAGCTGCCTACCTTGAGCGACTGAAACAGCAGCCCCAACACAGGAGGAT
GATGGGACCAACCACATCAGCTTTGGTTAGACCTTCACCTCCCTTTTCAA
GGCCACCACCTGGAGCAGCCCTGAGAGTGATGCCACCAAAGAAACGAGTC
AAGATTGACAAAGATGAGAATGATTCTGATAGTAGCACTCAATCCAAAAA
TGACGACGAACCTATCAGGAAGCGTCCTTTGGTTACCAAAATCAAGGTAC
aatgcatattttaaATTGAATGGAGAAAGTTAATTATGTACTTAAtgtat
ttcttaaattttccattttactTCAGGGGTATTACTGCTTCCTCACCTGT
TGCAGTCCTCAATGCAGTTTTGAACAATCAATCTAAAGGTGTAAATCCTC
TTTTTTACAAATGTCCATCTGGAGCTTCATCTTATGGCCTTGTGAGGACA
AGAAAAAGACCGGGCACTACCATGACCAAAGCACCTCCTTATACTCCTCC
AAAACAAAATCAGATAACAAGAGAAGTTAAAGAGCTACCCAAGAGGGAGG
CAAGAGtcacaaaaaagttgaatccACCCACTGCTCAAATTTCCCGGTCA
CTGAATCCTCCAGGAAAGGCGTTTCCTGCTCCATCTGGTCTAAGAGTGAA
GAAGCCGTTGATACCTCCAGGTGAGAAGACACCAGTCACTAATATCACCA
ACCGATACACACCACCCCTTGGATCGCTTTCCAAAGCTGCCTACCTTGAG
CGACTGAAACAGCAGCCCCAACACAGGAGGATGATGGGACCAACCACATC
AGCTTTGGTTAGACCTTCACCTCCCTTTTCAAGGCCACCACCTGGAGCAG
CCCTGAGAGTGATGCCACCAAAGAAACGAGTCAAGATTGACAAAGATGAG
AATGATTCTGATAGTAGCACTCAATCCAAAAATGACGACGAACCTATCAG
GAAGCGTCCTTTGGTTACCAAAATCAAGGTACaatgcatattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042527-exon-sc0003475-1491911889:1678..1857 | TCONS_00042527-exon-sc0003475-1491911889:1678..1857 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1510915933:1678..1857 | TCONS_00042527-exon-sc0003475-1510915933:1678..1857 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1575043694:1678..1857 | TCONS_00042527-exon-sc0003475-1575043694:1678..1857 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1491911889:2092..2188 | TCONS_00042527-exon-sc0003475-1491911889:2092..2188 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1510915933:2092..2188 | TCONS_00042527-exon-sc0003475-1510915933:2092..2188 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1575043694:2092..2188 | TCONS_00042527-exon-sc0003475-1575043694:2092..2188 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1491911889:2401..3305 | TCONS_00042527-exon-sc0003475-1491911889:2401..3305 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1510915933:2401..3305 | TCONS_00042527-exon-sc0003475-1510915933:2401..3305 | Clytia hemisphaerica | exon |
| TCONS_00042527-exon-sc0003475-1575043694:2401..3305 | TCONS_00042527-exon-sc0003475-1575043694:2401..3305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003475 | supercontig | sc0003475:1678..3305 + |
Blast
The following BLAST results are available for this feature:
|
