TCONS_00042526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042526
Unique NameTCONS_00042526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042526 ID=TCONS_00042526|Name=TCONS_00042526|organism=Clytia hemisphaerica|type=transcript|length=796bp
TCAAGATTGAAATCTCCAGAGATATAGATGTTGTTATAATTTGGTTCATA
ATAATGAATAACTTCagataaagtagtaaaaaataaatcaatttttattc
tatctggtctgtaaatatTGATGACTAAAATTTCTTTAGATCTGAGCCTT
AGTTCCAAGGGCAAGATATGTAGGGCAGGGTCTATTTCAAACTTAGTTAA
TTGACGCACAGGGATGTCGTTTTTTACATAAGTTAACAAACCCCCACTGT
CTGAGCTACAATCGATACGAAAGGGAGGAAAGTGATAACCCTCAAACTTA
AAATCTGAACTCGGAAAAGACTCATCTAGTTTGGTTTCTGCGATNAGGGA
TGTCGTTTTTTACATAAGTTAACAAACCCCCACTGTCTGAGCTACAATCG
ATACGAAAGGGAGGAAAGTGATAACCCTCAAACTTAAAATCTGAACTCGG
AAAAGACTCATCTAGTTTGGTTTCTGCGATGGTGAGAACATCAAAAGTAT
TCCCAGCAAAAACTTTTAGACCAAAGAACTTATATCTTATCGAGTTTATA
TTCAAATAGGCAAGAAGAATATTGTTAGAGTTTTTTAGCTTAAGATTAAC
TACAACGTTCAAACCATTCAATTCATTCAAATCTTCATCAACAACATCAT
TAACAACAACAAACTGGTCATCACCGTCAGCTTTATCGTAtcaacaattt
tccaaaataaaacattttagaTTTTGCGCAAAGCAAGATATTCCTGACCC
ATTGAGATGCAATTTTCTCTTGGAGAGCATCTTAGGAATAATGTTT
Run BLAST on NCBI

transcript from alignment at sc0003474:10744..11539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042526 ID=TCONS_00042526|Name=TCONS_00042526|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0003474:10744..11539 (Clytia hemisphaerica)
AAACATTATTCCTAAGATGCTCTCCAAGAGAAAATTGCATCTCAATGGGT
CAGGAATATCTTGCTTTGCGCAAAAtctaaaatgttttattttggaaaat
tgttgaTACGATAAAGCTGACGGTGATGACCAGTTTGTTGTTGTTAATGA
TGTTGTTGATGAAGATTTGAATGAATTGAATGGTTTGAACGTTGTAGTTA
ATCTTAAGCTAAAAAACTCTAACAATATTCTTCTTGCCTATTTGAATATA
AACTCGATAAGATATAAGTTCTTTGGTCTAAAAGTTTTTGCTGGGAATAC
TTTTGATGTTCTCACCATCGCAGAAACCAAACTAGATGAGTCTTTTCCGA
GTTCAGATTTTAAGTTTGAGGGTTATCACTTTCCTCCCTTTCGTATCGAT
TGTAGCTCAGACAGTGGGGGTTTGTTAACTTATGTAAAAAACGACATCCC
TNATCGCAGAAACCAAACTAGATGAGTCTTTTCCGAGTTCAGATTTTAAG
TTTGAGGGTTATCACTTTCCTCCCTTTCGTATCGATTGTAGCTCAGACAG
TGGGGGTTTGTTAACTTATGTAAAAAACGACATCCCTGTGCGTCAATTAA
CTAAGTTTGAAATAGACCCTGCCCTACATATCTTGCCCTTGGAACTAAGG
CTCAGATCTAAAGAAATTTTAGTCATCAatatttacagaccagatagaat
aaaaattgatttattttttactactttatctGAAGTTATTCATTATTATG
AACCAAATTATAACAACATCTATATCTCTGGAGATTTCAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026351XLOC_026351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042526-exon-sc0003474-1491911889:10744..11539TCONS_00042526-exon-sc0003474-1491911889:10744..11539Clytia hemisphaericaexon
TCONS_00042526-exon-sc0003474-1510915933:10744..11539TCONS_00042526-exon-sc0003474-1510915933:10744..11539Clytia hemisphaericaexon
TCONS_00042526-exon-sc0003474-1575043694:10744..11539TCONS_00042526-exon-sc0003474-1575043694:10744..11539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003474supercontigsc0003474:10744..11539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141964	0.176813	0.160739	0.200851	3.29883	3.18067	1.90379	2.21962	1.20105	0.884272	0.673562	0.347766	0.335195	0.125232	0.205916	0	0.186707	0.651059	0.0642481	0.268924	0.408465	0	0.485088	0.139275	0.0648908	0	0.497244	0.365921	0	0.41008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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