TCONS_00042525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042525
Unique NameTCONS_00042525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042525 ID=TCONS_00042525|Name=TCONS_00042525|organism=Clytia hemisphaerica|type=transcript|length=636bp
AGAACATCTTGTTCCGTATGGTGAAACATGGCAAGAGAATGCAAATCAAA
CCTCTCATAAATCATTTTCAACTCGGTAAGATTGCTTCCTTGTTCTACTA
ATCGTTATTGATCCAGAGTTGAGTTTCGAGGAACATATCTCTAAGCAAGT
CAACAAGGCTAATTCGATGCTTGGAGTTATTAACCGTGGCTTCCGAAACC
TTAGCTAACAGACTTTTCTTACTTTGTACTGTACTTTCGTTCGACCGCAT
CTAAGGAAACACGTCAACTTATTGGAAGGAGTGCAGAGGCGTGCGACAAG
GCTtgtcaaactttacaaaaatctcTCTTATGAGGATAGACTATGAAGTT
TACAATTACCAACACTAGAGTTTCGTAGAACTTTTTGTGAGATGCTGCAA
GTCTATAAGCATCTTCACTTCTACAATAAAGCTacgattccaaaaaaaaa
tactcATCGGCCACGTCCGAATCGACAACACAAAGATGAACTGGATTCCG
CGGCCCGCAAACAAAGTCGTTCTACTACAGAATCATCCCTACGTGGAATA
AATTGTCGCCTGAGGTGGTAGCTGCTGATTCCATTAAAGGCTTCGAAAGT
TGAAAGAAGCATGGAAAAGCCATCCAAAGAAATTCG
Run BLAST on NCBI

transcript from alignment at sc0003474:4340..4975-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042525 ID=TCONS_00042525|Name=TCONS_00042525|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at sc0003474:4340..4975- (Clytia hemisphaerica)
AGAACATCTTGTTCCGTATGGTGAAACATGGCAAGAGAATGCAAATCAAA
CCTCTCATAAATCATTTTCAACTCGGTAAGATTGCTTCCTTGTTCTACTA
ATCGTTATTGATCCAGAGTTGAGTTTCGAGGAACATATCTCTAAGCAAGT
CAACAAGGCTAATTCGATGCTTGGAGTTATTAACCGTGGCTTCCGAAACC
TTAGCTAACAGACTTTTCTTACTTTGTACTGTACTTTCGTTCGACCGCAT
CTAAGGAAACACGTCAACTTATTGGAAGGAGTGCAGAGGCGTGCGACAAG
GCTTGTCAAACTTTACAAAAATCTCTCTTATGAGGATAGACTATGAAGTT
TACAATTACCAACACTAGAGTTTCGTAGAACTTTTTGTGAGATGCTGCAA
GTCTATAAGCATCTTCACTTCTACAATAAAGCTACGATTCCAAAAAAAAA
TACTCATCGGCCACGTCCGAATCGACAACACAAAGATGAACTGGATTCCG
CGGCCCGCAAACAAAGTCGTTCTACTACAGAATCATCCCTACGTGGAATA
AATTGTCGCCTGAGGTGGTAGCTGCTGATTCCATTAAAGGCTTCGAAAGT
TGAAAGAAGCATGGAAAAGCCATCCAAAGAAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026350XLOC_026350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042525-exon-sc0003474-1575043694:4340..4975TCONS_00042525-exon-sc0003474-1575043694:4340..4975Clytia hemisphaericaexon
TCONS_00042525-exon-sc0003474-1510915933:4340..4975TCONS_00042525-exon-sc0003474-1510915933:4340..4975Clytia hemisphaericaexon
TCONS_00042525-exon-sc0003474-1491911889:4340..4975TCONS_00042525-exon-sc0003474-1491911889:4340..4975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003474supercontigsc0003474:4340..4975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505346	0.342551	0.512623	0.33065	0.363636	0.796864	0.333736	0.100004	0.0812791	0.304131	0	0.240258	0.298345	0.172158	0.469383	0.497537	0.195579	0.538734	0	0.222135	0.404862	0.940399	0.128597	0.0930475	0.356823	0.0796141	0.129126	0.127774	0.225319	0.221165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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