TCONS_00042524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042524
Unique NameTCONS_00042524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042524 ID=TCONS_00042524|Name=TCONS_00042524|organism=Clytia hemisphaerica|type=transcript|length=521bp
caatTGTTTACCTTTATGctatttctttatattttcgGACCATCTTTTTT
TCTCGTACAATGAAGCATGTCAAGCGGCATCGAAACTTGGCCAATCGGTA
ATTTTCTATTGTCGATTATCTTTTCGACGGTTTTGGAGCTTTTAAACTTA
AACACGGatttatttgaatttgtatCATGAATCTTCTGTATTTCTGAAGG
AAAATTTACCTTGTATCATTTCTATCTATCTTCAGAACATCTTGTTCCGT
ATGGTGAAACATGGCAAGAGAATGCAAATCAAACCTCTCATAAATCATTT
TCAACTCGGTTTGGATTACGAAATTCCGCCGGGCTGCATTGCTCTCACTT
TTTGGAATGTTTGGGTCTAGCCAAAGATcgtgttcaaaaataaaggcctg
ttttgtgacattttcaaacTGGCTGACAattatgttaataaaatgagtat
ttttggtggctaacagtttattttttcaccaagGATAAGTAGAATGATTA
ACCTTTCCAATTGTTTTGGAG
Run BLAST on NCBI

transcript from alignment at sc0003474:822..5208-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042524 ID=TCONS_00042524|Name=TCONS_00042524|organism=Clytia hemisphaerica|type=transcript|length=4387bp|location=Sequence derived from alignment at sc0003474:822..5208- (Clytia hemisphaerica)
CAATTGTTTACCTTTATGCTATTTCTTTATATTTTCGGACCATCTTTTTT
TCTCGTACAATGAAGCATGTCAAGCGGCATCGAAACTTGGCCAATCGGTA
ATTTTCTATTGTCGATTATCTTTTCGACGGTTTTGGAGCTTTTAAACTTA
AACACGGATTTATTTGAATTTGTATCATGAATCTTCTGTATTTCTGAAGG
AAAATTTACCTTGTATCATTTCTATCTATCTTCAGAACATCTTGTTCCGT
ATGGTGAAACATGGCAAGAGAATGCAAATCAAACCTCTCATAAATCATTT
TCAACTCGGTAAGATTGCTTCCTTGTTCTACTAATCGTTATTGATCCAGA
GTTGAGTTTCGAGGAACATATCTCTAAGCAAGTCAACAAGGCTAATTCGA
TGCTTGGAGTTATTAACCGTGGCTTCCGAAACCTTAGCTAACAGACTTTT
CTTACTTTGTACTGTACTTTCGTTCGACCGCATCTAAGGAAACACGTCAA
CTTATTGGAAGGAGTGCAGAGGCGTGCGACAAGGCTTGTCAAACTTTACA
AAAATCTCTCTTATGAGGATAGACTATGAAGTTTACAATTACCAACACTA
GAGTTTCGTAGAACTTTTTGTGAGATGCTGCAAGTCTATAAGCATCTTCA
CTTCTACAATAAAGCTACGATTCCAAAAAAAAATACTCATCGGCCACGTC
CGAATCGACAACACAAAGATGAACTGGATTCCGCGGCCCGCAAACAAAGT
CGTTCTACTACAGAATCATCCCTACGTGGAATAAATTGTCGCCTGAGGTG
GTAGCTGCTGATTCCATTAAAGGCTTCGAAAGTTGAAAGAAGCATGGAAA
AGCCATCCAAAGAAATTCGATACACGAAATTTCTAAATTGAGATTGGTTT
AAAGGCCCACTGAGTGCCTACAACCTGTTATTCTTTTTGATAAAAAAATA
ATAATAATCTATCGGCTCCTTTGTTTCGCAGGACTACATTTTTTGAAATT
TGGCGATAGATTTTAGTTTCAATACGGCGTTTGTGTAAAAAGTACGCGCG
GGCGTTCTTGATCTGAAATAGGTGGTTTCATTTCACATCCAGGAGTCTCG
CCTCTAGCCCTTCAGGCTTTAAACTCAATGGTCCTGACCCATAGCACAAA
ACTAAAACCAGCCGCACGCTGCGAGTCCCAATCTAGTGAATCATTATGCA
TATAACAAACTATAACGGAAGAAAAATAACTACCAATTGATTTATGCCAT
TCTCATTTTATGGAATTATGCCTGCAAAATAAATTATTGTTCCTCCTTCT
TATTTCAAGACGTTCTGACTGTAGTGAGAGATAACACTACATTGCATTTT
CCACCACAATGAAGTAAAAGCGGCGGTGAAGAATAATATTTTAGATCTTT
TTAGCCAACCTGGCTAGATAGGTGGTTTGACATTCGAGGGTGATTTTGAA
AGACTTTTTAAAGTTTTTAAAGTAATAGGAAGCCACCAATGTAACAAAAC
GTTGAATTAGAATTCCTCAAAATGAAAAAGGGAACACTTCGAACACTTCG
TTACGAGAAGGAAGTATAATTAACGATTTGATTGTTAATGACAATGGAGA
ACGATTTCACGAATTCTTTGAACTGAATAAATTGTCTGTATTGAATACTT
GGTTTACGCATAAAAATTGCAGACGAATTACGTGGCACTCCCNNNNNNNN
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NNNNNNNNCAAAAAAGGACGCATCAAAGTATCGGGGTCTTAGTATCGGAT
CTACTATCTGTAAGCTCGTTGTCAATATCATCTTATTCCGACTCCGCGAC
TGGTACGAATGTCAACTACTCGACGAACAGAACGGGTTCCGTCCAAACCG
TGGCACTACTGATGGGATTTACACAGTAAAGAGAATACACCAAATCAGTC
ATCGAAAACAACAGCCATTGTATCTATTATTTGTCGACCTCTCAGCCGCC
TTCGATCATATACCCCGTAAATGGCTGTTTGATACAATTTGTCTTCGTTT
CACCGACAAAAAGTCACCGATTATGATCAAGATATTGGAAAAACTTTATC
AACACACCTCTCTAACCTATGAAGGAGAATTATTCCAAACATCTTCTGGA
GTCCGCCAAGGTGGGCCAGAAAGCCCGTTTTTGTTCAACTTATATCTCGA
TTTCGTCATGCGTCTGATACTCGAAAAATCACACTTAAATGATGATATCA
AGTTCTTTGATCACAAATACCAAATCAGCACTAGCTCTCTTTCGCGAGCA
GAGAGATTATCGACTCGTAAAAAGAACATTAATCTCTCAAACTTANNNNN
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NNNNNNNNNNNNATTATTATTATTATTATTAAAGACTTCCGACCAAAAGT
TATAACTTCGTTATAAGTCTTTGTTTCGACATACTAAAGCTCTGAAGGTC
GGAAAAATTTTCAATCTCTTGTAGGTTTGGATTACGAAATTCCGCCGGGC
TGCATTGCTCTCACTTTTTGGAATGTTTGGGTCTAGCCAAAGATCGTGTT
CAAAAATAAAGGCCTGTTTTGTGACATTTTCAAACTGGCTGACAATTATG
TTAATAAAATGAGTATTTTTGGTGGCTAACAGTTTATTTTTTCACCAAGG
ATAAGTAGAATGATTAACCTTTCCAATTGTTTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026350XLOC_026350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042524-exon-sc0003474-1575043694:4901..5208TCONS_00042524-exon-sc0003474-1575043694:4901..5208Clytia hemisphaericaexon
TCONS_00042524-exon-sc0003474-1575043694:822..1034TCONS_00042524-exon-sc0003474-1575043694:822..1034Clytia hemisphaericaexon
TCONS_00042524-exon-sc0003474-1510915933:4901..5208TCONS_00042524-exon-sc0003474-1510915933:4901..5208Clytia hemisphaericaexon
TCONS_00042524-exon-sc0003474-1510915933:822..1034TCONS_00042524-exon-sc0003474-1510915933:822..1034Clytia hemisphaericaexon
TCONS_00042524-exon-sc0003474-1491911889:4901..5208TCONS_00042524-exon-sc0003474-1491911889:4901..5208Clytia hemisphaericaexon
TCONS_00042524-exon-sc0003474-1491911889:822..1034TCONS_00042524-exon-sc0003474-1491911889:822..1034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003474supercontigsc0003474:822..5208 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62206	2.66393	4.55516	2.42792	1.07342	0.89651	0.730965	1.83258	0.715615	0.295914	0.239966	0.638326	0.880109	0.70684	0.519843	0.861411	1.45916	1.41019	0.241754	0.328433	1.69718	1.64149	2.54459	1.54721	0.854603	0.762713	2.46415	1.72366	2.09214	3.2361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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