TCONS_00042523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042523
Unique NameTCONS_00042523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042523 ID=TCONS_00042523|Name=TCONS_00042523|organism=Clytia hemisphaerica|type=transcript|length=375bp
ttttgattgttttcagtttttcatcgTTTAGTGAGATGGCTCGGTGAGGT
ATTTGCCTTCGTACAAGCAAGCGTTTTCTTTTTGGTTGAATTTCAAGTTT
CCTGGGCAAGCAATACATCCGACAGTGACTCCCTTCCAGCAAGCAACGTA
TTGACGGTCATTACTTGGGTCTTCAACGTTTCCACTGAAGTGTGGTCCGT
AATGGGGGCATTTGTCTGGGCAAGAGAAAGTGGTGGCTGGATGCCATTTT
TGTGTGGTGACACAGTCGTCGTATTTGTTGTGCAAACATTGGTTGCAAGT
TTGACTGAATTCCAAGGAGAGAGGGAAACAAGCTTGACAGTAAGCCAATC
CGTTGGAGCATTGGACAAAGTAGTT
Run BLAST on NCBI

protein sequence of TCONS_00042523-protein

>TCONS_00042523-protein ID=TCONS_00042523-protein|Name=TCONS_00042523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
NYFVQCSNGLAYCQACFPLSLEFSQTCNQCLHNKYDDCVTTQKWHPATTF
SCPDKCPHYGPHFSGNVEDPSNDRQYVACWKGVTVGCIACPGNLKFNQKE
NACLYEGKYLTEPSH
Run BLAST on NCBI

transcript from alignment at sc0003473:1896..2270

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042523 ID=TCONS_00042523|Name=TCONS_00042523|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0003473:1896..2270 (Clytia hemisphaerica)
AACTACTTTGTCCAATGCTCCAACGGATTGGCTTACTGTCAAGCTTGTTT
CCCTCTCTCCTTGGAATTCAGTCAAACTTGCAACCAATGTTTGCACAACA
AATACGACGACTGTGTCACCACACAAAAATGGCATCCAGCCACCACTTTC
TCTTGCCCAGACAAATGCCCCCATTACGGACCACACTTCAGTGGAAACGT
TGAAGACCCAAGTAATGACCGTCAATACGTTGCTTGCTGGAAGGGAGTCA
CTGTCGGATGTATTGCTTGCCCAGGAAACTTGAAATTCAACCAAAAAGAA
AACGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCATCTCACTAAAc
gatgaaaaactgaaaacaatcaaaa

Coding sequence (CDS) from alignment at sc0003473:1896..2270

>TCONS_00042523 ID=TCONS_00042523|Name=TCONS_00042523|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0003473:1896..2270 (Clytia hemisphaerica)
AACTACTTTGTCCAATGCTCCAACGGATTGGCTTACTGTCAAGCTTGTTT
CCCTCTCTCCTTGGAATTCAGTCAAACTTGCAACCAATGTTTGCACAACA
AATACGACGACTGTGTCACCACACAAAAATGGCATCCAGCCACCACTTTC
TCTTGCCCAGACAAATGCCCCCATTACGGACCACACTTCAGTGGAAACGT
TGAAGACCCAAGTAATGACCGTCAATACGTTGCTTGCTGGAAGGGAGTCA
CTGTCGGATGTATTGCTTGCCCAGGAAACTTGAAATTCAACCAAAAAGAA
AACGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCATCTCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026349XLOC_026349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042523-exon-sc0003473-1491911889:1896..2270TCONS_00042523-exon-sc0003473-1491911889:1896..2270Clytia hemisphaericaexon
TCONS_00042523-exon-sc0003473-1510915933:1896..2270TCONS_00042523-exon-sc0003473-1510915933:1896..2270Clytia hemisphaericaexon
TCONS_00042523-exon-sc0003473-1575043694:1896..2270TCONS_00042523-exon-sc0003473-1575043694:1896..2270Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042523-proteinTCONS_00042523-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003473supercontigsc0003473:1896..2270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271475	0.317843	0	0	0	0	0	2.02187	1.65347	2.12506	1.41585	8.54319	2.56769	12.8208	25.4909	6.95458	0	0	0.681572	0	0	0	0	0	0	0	0.369426	0	0.0569088	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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