TCONS_00042521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042521
Unique NameTCONS_00042521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042521 ID=TCONS_00042521|Name=TCONS_00042521|organism=Clytia hemisphaerica|type=transcript|length=497bp
gtttcaataaagCGTGGCATCTCATCAACAGATAGATAGCAGTTTACACC
AAGCTGTTTGTATAACTTATCTCCCTCAATCAGGATATTGTCTAAGTCGG
TGGTTTTCCAAATAGAAACACGTCGAAAATTTGACCAGAATATCGCATAG
AGGCAATTGACGCTACACTGAGTTCCTGCAGTTAGGCCGAACAGCTCTTC
ATTTGCTTGATTAAACGAACCCAAAAtggcttttgaaatttgataatttG
GCATGCTTGACATTCTCTGGGAAAATAATTCAGTCTCGTGTACAATCAAA
TGACTACGACGTAGTCTACGTTCAGTAGATATTAAGTGTGATACGCAAGA
TTGGTTATATCGGTTAGATTGGTTGGATAGGTTGATTAAGTTCTGTAGGT
TAAGTAGGTTAAGTAGGTTAAGCAGGTTAAGTAGGTTAAGTAAGAGGGTG
CAAGGAGCTCGCATGCAACCCTCTGGTGTGTAGCTACTTGTTTGATA
Run BLAST on NCBI

protein sequence of TCONS_00042521-protein

>TCONS_00042521-protein ID=TCONS_00042521-protein|Name=TCONS_00042521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
YQTSSYTPEGCMRAPCTLLLNLLNLLNLLNLLNLQNLINLSNQSNRYNQS
CVSHLISTERRLRRSHLIVHETELFSQRMSSMPNYQISKAILGSFNQANE
ELFGLTAGTQCSVNCLYAIFWSNFRRVSIWKTTDLDNILIEGDKLYKQLG
VNCYLSVDEMPRFIE
Run BLAST on NCBI

transcript from alignment at sc0003472:8487..8983

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042521 ID=TCONS_00042521|Name=TCONS_00042521|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0003472:8487..8983 (Clytia hemisphaerica)
TATCAAACAAGTAGCTACACACCAGAGGGTTGCATGCGAGCTCCTTGCAC
CCTCTTACTTAACCTACTTAACCTGCTTAACCTACTTAACCTACTTAACC
TACAGAACTTAATCAACCTATCCAACCAATCTAACCGATATAACCAATCT
TGCGTATCACACTTAATATCTACTGAACGTAGACTACGTCGTAGTCATTT
GATTGTACACGAGACTGAATTATTTTCCCAGAGAATGTCAAGCATGCCaa
attatcaaatttcaaaagccaTTTTGGGTTCGTTTAATCAAGCAAATGAA
GAGCTGTTCGGCCTAACTGCAGGAACTCAGTGTAGCGTCAATTGCCTCTA
TGCGATATTCTGGTCAAATTTTCGACGTGTTTCTATTTGGAAAACCACCG
ACTTAGACAATATCCTGATTGAGGGAGATAAGTTATACAAACAGCTTGGT
GTAAACTGCTATCTATCTGTTGATGAGATGCCACGctttattgaaac

Coding sequence (CDS) from alignment at sc0003472:8487..8983

>TCONS_00042521 ID=TCONS_00042521|Name=TCONS_00042521|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0003472:8487..8983 (Clytia hemisphaerica)
TATCAAACAAGTAGCTACACACCAGAGGGTTGCATGCGAGCTCCTTGCAC
CCTCTTACTTAACCTACTTAACCTGCTTAACCTACTTAACCTACTTAACC
TACAGAACTTAATCAACCTATCCAACCAATCTAACCGATATAACCAATCT
TGCGTATCACACTTAATATCTACTGAACGTAGACTACGTCGTAGTCATTT
GATTGTACACGAGACTGAATTATTTTCCCAGAGAATGTCAAGCATGCCaa
attatcaaatttcaaaagccaTTTTGGGTTCGTTTAATCAAGCAAATGAA
GAGCTGTTCGGCCTAACTGCAGGAACTCAGTGTAGCGTCAATTGCCTCTA
TGCGATATTCTGGTCAAATTTTCGACGTGTTTCTATTTGGAAAACCACCG
ACTTAGACAATATCCTGATTGAGGGAGATAAGTTATACAAACAGCTTGGT
GTAAACTGCTATCTATCTGTTGATGAGATGCCACGctttattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026347XLOC_026347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042521-exon-sc0003472-1491911889:8487..8983TCONS_00042521-exon-sc0003472-1491911889:8487..8983Clytia hemisphaericaexon
TCONS_00042521-exon-sc0003472-1510915933:8487..8983TCONS_00042521-exon-sc0003472-1510915933:8487..8983Clytia hemisphaericaexon
TCONS_00042521-exon-sc0003472-1575043694:8487..8983TCONS_00042521-exon-sc0003472-1575043694:8487..8983Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042521-proteinTCONS_00042521-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003472supercontigsc0003472:8487..8983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36956	0	0.139478	0.136458	0	0.131273	0.316752	0	0.207614	0.385745	0	0.410208	0.491565	0.68066	0	0.150133	0	0.189569	0	0	0	0.522852	0	0.128411	0.92582	0.944311	0	0	0.273455	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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