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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042515 ID=TCONS_00042515|Name=TCONS_00042515|organism=Clytia hemisphaerica|type=transcript|length=1080bp
AAGCAAGAATTCTCCCtaatttttgttggaaattgtTTCCATCTCTTGAA
TGCTTTGGCAAAATTGTCATAGGAAttgcaatgtttttgttgataatttt
gtgaAGCATCATAATGCTGGCAATTTTGCGATGTTGTTCAGTTGATATCC
ATTCAAGTTTTTTGATCATTGCTGTAGGGCTGGACTCATAGTACCAATCA
CTATTCACAAAACGAGCTGCTTTTCTTTGGACTGATTCAAGCTCCTCTCG
CAGACCAGAGTTGGATAGACCTGTAGGATTCCATACACTAGATGCGTACA
TTATCATTGGCAGAACATACGTCTTGTAAGCTtgaatttttgctttcttt
caACGACGAAGTGTTTGCTGTAAGAAACATCTCTTCTGATGAGCTTTGGT
ACATATTGATGAAACGTGCTTGTTCCACCTCAACTTTTTGTGGAGTGTAA
GACCAAGATACTTTGCCGATTCGACAGATTCAAGCTCCTCACCGTGAATT
GTGTACGAGGTTGAAATGGGCTTCAGTTTGTTTGTGATTGATAACAATTT
ACACTTTTGGGGGTGGAATTCCATGTCCCAGTTTCATTCCCAAGTTTGCA
GTTTATCAAGATCTTCTTGGAGATGGTACATATCTGAAATTGATTTAATA
CATCTATACAAGTATGCGTCATCTGCAAATAATCTCAGTAACGACTGTAG
GAGAGCTGGCATGTCCTTTACATAAATTAGAAAAAGAAGGGGCCCCAGAA
CAGTTCCCTGGGGTACGCCAGACAGAACATTGAGAAAATGATCCGTTTAG
GACAACTTGTTGTATTCTATCTTTGAGAAATGAAACAATCCATTTCAAGC
AATTCCCTTTGATTCCATAATGCTTGAGCTTGAGACCAAGTTTGTAGTGA
TTGACCTTATCAAAGGCTTTTGAAAAGTCTAACAAAATTGAGTCAATTTA
TTGTTTATCATTCAAGCCTACTGCAAAGTCGTTGACTGTGATAAGGAGTT
GCGATTCACAAGATCTGTTGTTTCGGAAACCGTGTTGCTCGTCAGATAGG
ATGTTGTTCTTGTTTAGGTGTTTCATGATA Run BLAST on NCBI protein sequence of TCONS_00042515-protein >TCONS_00042515-protein ID=TCONS_00042515-protein|Name=TCONS_00042515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MIMYASSVWNPTGLSNSGLREELESVQRKAARFVNSDWYYESSPTAMIKK
LEWISTEQHRKIASIMMLHKIINKNIAIPMTILPKHSRDGNNFQQKLGRI
LA Run BLAST on NCBI transcript from alignment at sc0003470:190..1269 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042515 ID=TCONS_00042515|Name=TCONS_00042515|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0003470:190..1269 (Clytia hemisphaerica)
TATCATGAAACACCTAAACAAGAACAACATCCTATCTGACGAGCAACACG
GTTTCCGAAACAACAGATCTTGTGAATCGCAACTCCTTATCACAGTCAAC
GACTTTGCAGTAGGCTTGAATGATAAACAATAAATTGACTCAATTTTGTT
AGACTTTTCAAAAGCCTTTGATAAGGTCAATCACTACAAACTTGGTCTCA
AGCTCAAGCATTATGGAATCAAAGGGAATTGCTTGAAATGGATTGTTTCA
TTTCTCAAAGATAGAATACAACAAGTTGTCCTAAACGGATCATTTTCTCA
ATGTTCTGTCTGGCGTACCCCAGGGAACTGTTCTGGGGCCCCTTCTTTTT
CTAATTTATGTAAAGGACATGCCAGCTCTCCTACAGTCGTTACTGAGATT
ATTTGCAGATGACGCATACTTGTATAGATGTATTAAATCAATTTCAGATA
TGTACCATCTCCAAGAAGATCTTGATAAACTGCAAACTTGGGAATGAAAC
TGGGACATGGAATTCCACCCCCAAAAGTGTAAATTGTTATCAATCACAAA
CAAACTGAAGCCCATTTCAACCTCGTACACAATTCACGGTGAGGAGCTTG
AATCTGTCGAATCGGCAAAGTATCTTGGTCTTACACTCCACAAAAAGTTG
AGGTGGAACAAGCACGTTTCATCAATATGTACCAAAGCTCATCAGAAGAG
ATGTTTCTTACAGCAAACACTTCGTCGTtgaaagaaagcaaaaattcaAG
CTTACAAGACGTATGTTCTGCCAATGATAATGTACGCATCTAGTGTATGG
AATCCTACAGGTCTATCCAACTCTGGTCTGCGAGAGGAGCTTGAATCAGT
CCAAAGAAAAGCAGCTCGTTTTGTGAATAGTGATTGGTACTATGAGTCCA
GCCCTACAGCAATGATCAAAAAACTTGAATGGATATCAACTGAACAACAT
CGCAAAATTGCCAGCATTATGATGCTtcacaaaattatcaacaaaaacat
tgcaaTTCCTATGACAATTTTGCCAAAGCATTCAAGAGATGGAAacaatt
tccaacaaaaattaGGGAGAATTCTTGCTT Coding sequence (CDS) from alignment at sc0003470:190..1269 >TCONS_00042515 ID=TCONS_00042515|Name=TCONS_00042515|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0003470:190..1269 (Clytia hemisphaerica)
ATGATAATGTACGCATCTAGTGTATGGAATCCTACAGGTCTATCCAACTC
TGGTCTGCGAGAGGAGCTTGAATCAGTCCAAAGAAAAGCAGCTCGTTTTG
TGAATAGTGATTGGTACTATGAGTCCAGCCCTACAGCAATGATCAAAAAA
CTTGAATGGATATCAACTGAACAACATCGCAAAATTGCCAGCATTATGAT
GCTtcacaaaattatcaacaaaaacattgcaaTTCCTATGACAATTTTGC
CAAAGCATTCAAGAGATGGAAacaatttccaacaaaaattaGGGAGAATT
CTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042515-exon-sc0003470-1491911889:190..1269 | TCONS_00042515-exon-sc0003470-1491911889:190..1269 | Clytia hemisphaerica | exon |
| TCONS_00042515-exon-sc0003470-1510915933:190..1269 | TCONS_00042515-exon-sc0003470-1510915933:190..1269 | Clytia hemisphaerica | exon |
| TCONS_00042515-exon-sc0003470-1575043694:190..1269 | TCONS_00042515-exon-sc0003470-1575043694:190..1269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003470 | supercontig | sc0003470:190..1269 . |
Blast
The following BLAST results are available for this feature:
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