TCONS_00042514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042514
Unique NameTCONS_00042514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042514 ID=TCONS_00042514|Name=TCONS_00042514|organism=Clytia hemisphaerica|type=transcript|length=572bp
TGGAAATCGAAACCAATTatcattaaaaagtaaaaaacaactGATACATA
CTGTATGGACATTTGAATACTTAAATGTTAGGTTGCATTTTATTGTACAT
ATTACACTGTTATGTAACTATACCTTAAATTTGATAGTGATTTATCATGA
TTTCCACCATATATCTCTCTGAAGGCTTCGATTGAGACATCCTGTGTTTG
TTCCTTGGTCGATTGAGAGTCAGTAAAGGCTTCAGATACTTCGCCCaaaa
tttctgatttcttgATTTGATTAACGAAACTGACTTTGGCCTTGCCATAT
AGAGCAGATGTCGAGTCGCATCCAGTCTAAGCATGGATGATCaagagatg
ttttttttgtccattttgctCGTCTTGACAGCTACCAATATCCCAACACT
TCTTTGCTCGTTCTGACAGGAACAAAAGTGGTTTCTTGCCAGTGATACGC
CATCATGACAGCCACGTCAGTGTCATCAGCGACTACAGTTGTTGATTCTT
GTTTTGCCAGCTCCGAGGCTTTGGATACGATCTTGGTGTCAACATCACCT
TCACAAGTATGGACGCTTTGGC
Run BLAST on NCBI

transcript from alignment at sc0003469:8370..8941

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042514 ID=TCONS_00042514|Name=TCONS_00042514|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0003469:8370..8941 (Clytia hemisphaerica)
GCCAAAGCGTCCATACTTGTGAAGGTGATGTTGACACCAAGATCGTATCC
AAAGCCTCGGAGCTGGCAAAACAAGAATCAACAACTGTAGTCGCTGATGA
CACTGACGTGGCTGTCATGATGGCGTATCACTGGCAAGAAACCACTTTTG
TTCCTGTCAGAACGAGCAAAGAAGTGTTGGGATATTGGTAGCTGTCAAGA
CGagcaaaatggacaaaaaaaacatctcttGATCATCCATGCTTAGACTG
GATGCGACTCGACATCTGCTCTATATGGCAAGGCCAAAGTCAGTTTCGTT
AATCAAATcaagaaatcagaaattttGGGCGAAGTATCTGAAGCCTTTAC
TGACTCTCAATCGACCAAGGAACAAACACAGGATGTCTCAATCGAAGCCT
TCAGAGAGATATATGGTGGAAATCATGATAAATCACTATCAAATTTAAGG
TATAGTTACATAACAGTGTAATATGTACAATAAAATGCAACCTAACATTT
AAGTATTCAAATGTCCATACAGTATGTATCagttgttttttactttttaa
tgatAATTGGTTTCGATTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026340XLOC_026340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042514-exon-sc0003469-1491911889:8370..8941TCONS_00042514-exon-sc0003469-1491911889:8370..8941Clytia hemisphaericaexon
TCONS_00042514-exon-sc0003469-1510915933:8370..8941TCONS_00042514-exon-sc0003469-1510915933:8370..8941Clytia hemisphaericaexon
TCONS_00042514-exon-sc0003469-1575043694:8370..8941TCONS_00042514-exon-sc0003469-1575043694:8370..8941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003469supercontigsc0003469:8370..8941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0977348	0.190614	0.221321	0	0	0.416603	0.251307	0.352906	0.0823593	0.113272	0.891166	0.585818	0.951342	0.540028	0.688816	0.655125	0.660322	0.451206	0.103894	0.239026	0.377982	0.138275	0.112061	0.407518	0.104934	0.655555	0.134014	0.42907	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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