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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042511 ID=TCONS_00042511|Name=TCONS_00042511|organism=Clytia hemisphaerica|type=transcript|length=1171bp
TCCTCTAGTTTCCTGATTTCTGATTTTCGAGACTCTTCGGTTGGGATTTG
CCAATCTCCTTTTGCATAGCCAATGCTGCCACCAATCTTGGTCAAATCTC
CTTTATGGACGTGTGCGAATGGAGATGGATAGGTTGCACCAGCTGGGAGA
ACATtgttggcccaaatttgccaagCTTGATCGGCAGATGGTTGGAATTC
TACAGTAACCTTTTCTCCGTCAATGGTTAGAGTGTTACTCTCAATGAGCA
GCATCTCATCGCAGTGCTGCCTCCACAAATCAGCACAAACTTGTGCCTTT
TCATCAACACTTATGGTGTGGAGGGAATAATGATACTCGCGACTTCGTAT
TCGAGAGCCTAAGTTCCACAAAGAAAGTGATCCAATTGACATGGTAACTT
CTTTGCTCTCTGGTGCACCATCATCCGAAAACTCAAAGATGAAATGGTTT
TTGATGTCATTGAACCACATTAGACCTTTTTGAAGCTCTGGAACTTTGAG
GTGCAGGTCACAAATCATAGTGCATAGCGTTGACACTGTACGGGCTACTC
CAGAAAAACCTTTCATGATGTGAATTTCACCTATATCGATTCCCTtcaca
aatttttcaattttaccatGAGAAATTACAGCAGTTTTCAAATCCAAATC
AAATTCTCCATACTTTACTGGACTAACAATACCTTTAGAGTCATTGCCAA
ATGCTTGTTTTTGTATGGAACAAATAAAGTTGTATTTTCTGCGTGAGAGA
TGAGTTAAATACTTTGTCGCAACAGCCTTTTTTATACCAACGTCACTTTT
TGCGATAGCCTTGCTGAATTTACCATGAAGATTCTCAATAAACTTCCCAC
GCTTATAATTTAAAAGTAATACCTCTAATTGCTTTGTGCCAACTGCATTT
GTGAGATAGTCCCATGCACCATAAACTGCCCCTTGACTTCCACCATGAAT
ATATTCCAatacattttttgtttctttacgGCGCCGATATCGTGTTGAGC
TTGTAACATCAGTGATCATACTTTCAGTTGTTGGGTTCTTTTGACGTTTG
GTAACAGCATAATTTTTCTGCTCGAGAAGAGTATTTAACTTTTCATACTC
CTTAGCAAGGGTTTCTGTCTTTTGACGAAGTTCGGTTTCGTTCCTCATCA
ATTCTTCATTGATCTTTTCTA Run BLAST on NCBI protein sequence of TCONS_00042511-protein >TCONS_00042511-protein ID=TCONS_00042511-protein|Name=TCONS_00042511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
EKINEELMRNETELRQKTETLAKEYEKLNTLLEQKNYAVTKRQKNPTTES
MITDVTSSTRYRRRKETKNVLEYIHGGSQGAVYGAWDYLTNAVGTKQLEV
LLLNYKRGKFIENLHGKFSKAIAKSDVGIKKAVATKYLTHLSRRKYNFIC
SIQKQAFGNDSKGIVSPVKYGEFDLDLKTAVISHGKIEKFVKGIDIGEIH
IMKGFSGVARTVSTLCTMICDLHLKVPELQKGLMWFNDIKNHFIFEFSDD
GAPESKEVTMSIGSLSLWNLGSRIRSREYHYSLHTISVDEKAQVCADLWR
QHCDEMLLIESNTLTIDGEKVTVEFQPSADQAWQIWANNVLPAGATYPSP
FAHVHKGDLTKIGGSIGYAKGDWQIPTEESRKSEIRKLE Run BLAST on NCBI transcript from alignment at sc0003466:2476..3646 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042511 ID=TCONS_00042511|Name=TCONS_00042511|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at sc0003466:2476..3646 (Clytia hemisphaerica)
TAGAAAAGATCAATGAAGAATTGATGAGGAACGAAACCGAACTTCGTCAA
AAGACAGAAACCCTTGCTAAGGAGTATGAAAAGTTAAATACTCTTCTCGA
GCAGAAAAATTATGCTGTTACCAAACGTCAAAAGAACCCAACAACTGAAA
GTATGATCACTGATGTTACAAGCTCAACACGATATCGGCGCcgtaaagaa
acaaaaaatgtatTGGAATATATTCATGGTGGAAGTCAAGGGGCAGTTTA
TGGTGCATGGGACTATCTCACAAATGCAGTTGGCACAAAGCAATTAGAGG
TATTACTTTTAAATTATAAGCGTGGGAAGTTTATTGAGAATCTTCATGGT
AAATTCAGCAAGGCTATCGCAAAAAGTGACGTTGGTATAAAAAAGGCTGT
TGCGACAAAGTATTTAACTCATCTCTCACGCAGAAAATACAACTTTATTT
GTTCCATACAAAAACAAGCATTTGGCAATGACTCTAAAGGTATTGTTAGT
CCAGTAAAGTATGGAGAATTTGATTTGGATTTGAAAACTGCTGTAATTTC
TCatggtaaaattgaaaaatttgtgaAGGGAATCGATATAGGTGAAATTC
ACATCATGAAAGGTTTTTCTGGAGTAGCCCGTACAGTGTCAACGCTATGC
ACTATGATTTGTGACCTGCACCTCAAAGTTCCAGAGCTTCAAAAAGGTCT
AATGTGGTTCAATGACATCAAAAACCATTTCATCTTTGAGTTTTCGGATG
ATGGTGCACCAGAGAGCAAAGAAGTTACCATGTCAATTGGATCACTTTCT
TTGTGGAACTTAGGCTCTCGAATACGAAGTCGCGAGTATCATTATTCCCT
CCACACCATAAGTGTTGATGAAAAGGCACAAGTTTGTGCTGATTTGTGGA
GGCAGCACTGCGATGAGATGCTGCTCATTGAGAGTAACACTCTAACCATT
GACGGAGAAAAGGTTACTGTAGAATTCCAACCATCTGCCGATCAAGcttg
gcaaatttgggccaacaATGTTCTCCCAGCTGGTGCAACCTATCCATCTC
CATTCGCACACGTCCATAAAGGAGATTTGACCAAGATTGGTGGCAGCATT
GGCTATGCAAAAGGAGATTGGCAAATCCCAACCGAAGAGTCTCGAAAATC
AGAAATCAGGAAACTAGAGGA Coding sequence (CDS) from alignment at sc0003466:2476..3646 >TCONS_00042511 ID=TCONS_00042511|Name=TCONS_00042511|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at sc0003466:2476..3646 (Clytia hemisphaerica)
GAAAAGATCAATGAAGAATTGATGAGGAACGAAACCGAACTTCGTCAAAA
GACAGAAACCCTTGCTAAGGAGTATGAAAAGTTAAATACTCTTCTCGAGC
AGAAAAATTATGCTGTTACCAAACGTCAAAAGAACCCAACAACTGAAAGT
ATGATCACTGATGTTACAAGCTCAACACGATATCGGCGCcgtaaagaaac
aaaaaatgtatTGGAATATATTCATGGTGGAAGTCAAGGGGCAGTTTATG
GTGCATGGGACTATCTCACAAATGCAGTTGGCACAAAGCAATTAGAGGTA
TTACTTTTAAATTATAAGCGTGGGAAGTTTATTGAGAATCTTCATGGTAA
ATTCAGCAAGGCTATCGCAAAAAGTGACGTTGGTATAAAAAAGGCTGTTG
CGACAAAGTATTTAACTCATCTCTCACGCAGAAAATACAACTTTATTTGT
TCCATACAAAAACAAGCATTTGGCAATGACTCTAAAGGTATTGTTAGTCC
AGTAAAGTATGGAGAATTTGATTTGGATTTGAAAACTGCTGTAATTTCTC
atggtaaaattgaaaaatttgtgaAGGGAATCGATATAGGTGAAATTCAC
ATCATGAAAGGTTTTTCTGGAGTAGCCCGTACAGTGTCAACGCTATGCAC
TATGATTTGTGACCTGCACCTCAAAGTTCCAGAGCTTCAAAAAGGTCTAA
TGTGGTTCAATGACATCAAAAACCATTTCATCTTTGAGTTTTCGGATGAT
GGTGCACCAGAGAGCAAAGAAGTTACCATGTCAATTGGATCACTTTCTTT
GTGGAACTTAGGCTCTCGAATACGAAGTCGCGAGTATCATTATTCCCTCC
ACACCATAAGTGTTGATGAAAAGGCACAAGTTTGTGCTGATTTGTGGAGG
CAGCACTGCGATGAGATGCTGCTCATTGAGAGTAACACTCTAACCATTGA
CGGAGAAAAGGTTACTGTAGAATTCCAACCATCTGCCGATCAAGcttggc
aaatttgggccaacaATGTTCTCCCAGCTGGTGCAACCTATCCATCTCCA
TTCGCACACGTCCATAAAGGAGATTTGACCAAGATTGGTGGCAGCATTGG
CTATGCAAAAGGAGATTGGCAAATCCCAACCGAAGAGTCTCGAAAATCAG
AAATCAGGAAACTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042511-exon-sc0003466-1491911889:2476..3646 | TCONS_00042511-exon-sc0003466-1491911889:2476..3646 | Clytia hemisphaerica | exon |
| TCONS_00042511-exon-sc0003466-1510915933:2476..3646 | TCONS_00042511-exon-sc0003466-1510915933:2476..3646 | Clytia hemisphaerica | exon |
| TCONS_00042511-exon-sc0003466-1575043694:2476..3646 | TCONS_00042511-exon-sc0003466-1575043694:2476..3646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003466 | supercontig | sc0003466:2476..3646 . |
Blast
The following BLAST results are available for this feature:
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