TCONS_00042510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042510
Unique NameTCONS_00042510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042510 ID=TCONS_00042510|Name=TCONS_00042510|organism=Clytia hemisphaerica|type=transcript|length=291bp
CAAATAAAAATCTGATAATATTTATCATTATGGATACAGATAATGATATT
AATCTTGCTGTTGCTGGTGTGTTGAATCTTCTTGTTTACACTGTTTGTCT
GAAGGAAGACCACGAAAAAGCTACTTCGATATATGCAAAACCCCTGCCTC
TTGAAAATAATAATGACTCTGTACAAAAGCAGCAAAGgAGTTGCTCCAAA
TCTCGACAATGCTCAAAACCAGACCGTCATTCTGCAAAGTGTAATTCACT
ACGTAAGACAAACCCATTTTGGAACCGCACAAAGAAATTAC
Run BLAST on NCBI

transcript from alignment at sc0003466:1171..2256+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042510 ID=TCONS_00042510|Name=TCONS_00042510|organism=Clytia hemisphaerica|type=transcript|length=1086bp|location=Sequence derived from alignment at sc0003466:1171..2256+ (Clytia hemisphaerica)
CAAATAAAAATCTGATAATATTTATCATTATGGATACAGATAATGATATT
AATCTTGCTGTTGCTGGTGTGTTGAATCTTCTTGTTTACACTGTTTGTCT
GAAGGAAGACCACGAAAAAGCTACTTCGATATATGCAAAACCCCTGCCTC
TTGAAAATAATAATGACTCTGTACAAAAGCAGCAAAGGTAGGTATTGTGT
TTGAAATGATATTGGACGTAGTtaattgaaccaattgaacggtattttta
attgaactttgtcgaacttaatcgaatttttttcgttcgattaagttcga
caaagttcaaTTAGTTCGGTAGTcgcactctgttagagcttcttagcgtg
ggcggccgagcgcttaagtatcatactaaagcgaataaaatctaatacaa
ttgaatcaatcgaacgtaatcgaatacaatcgaacgtaatcgaagcaatc
gaacagcaaatcctgggtaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatatt
cgattgcgttcgacaatcgaattgcaattattcgattgcgttcaattgcg
ttcgattgattcggcgttcgattcgttcgattgacaccgtctgggtgTTT
GAAACCCCTGATAAAGCAGTTATGTATGCACCTCTTTAGCCTCTAATTGA
CCACTGTCATGTGCCGAAGGCTTTGTAATACAATGGCAAGTCAAGCGGAT
TACAATTTTGACTGTGCAGGCTAATTAACTAGGCTCTGTGAATTGTACAC
ACCCTAGAGGTTCCTTTTGGCATAACTATTTTATTTGTGTGATTTATCAT
TCAGTATTTTTTCTTGGGGACCAATCATATTTTCTGAAGAaatcaaatca
gcaaaaaatgaaatagttttttttctttacaggAGTTGCTCCAAATCTCG
ACAATGCTCAAAACCAGACCGTCATTCTGCAAAGTGTAATTCACTACGTA
AGACAAACCCATTTTGGAACCGCACAAAGAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026337XLOC_026337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042510-exon-sc0003466-1491911889:1171..1357TCONS_00042510-exon-sc0003466-1491911889:1171..1357Clytia hemisphaericaexon
TCONS_00042510-exon-sc0003466-1510915933:1171..1357TCONS_00042510-exon-sc0003466-1510915933:1171..1357Clytia hemisphaericaexon
TCONS_00042510-exon-sc0003466-1575043694:1171..1357TCONS_00042510-exon-sc0003466-1575043694:1171..1357Clytia hemisphaericaexon
TCONS_00042510-exon-sc0003466-1491911889:2153..2256TCONS_00042510-exon-sc0003466-1491911889:2153..2256Clytia hemisphaericaexon
TCONS_00042510-exon-sc0003466-1510915933:2153..2256TCONS_00042510-exon-sc0003466-1510915933:2153..2256Clytia hemisphaericaexon
TCONS_00042510-exon-sc0003466-1575043694:2153..2256TCONS_00042510-exon-sc0003466-1575043694:2153..2256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003466supercontigsc0003466:1171..2256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.06935	0.918758	2.7711	1.55656	0.726525	0.449959	0	0.287097	0.286698	0.595476	2.20303	0	0.32361	0.995069	3.66598	2.87714	0.833585	2.43956	0.494267	0	0	0	2.36438	2.52333	0	1.94992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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