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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042508 ID=TCONS_00042508|Name=TCONS_00042508|organism=Clytia hemisphaerica|type=transcript|length=117bp
TTATTGAAAGTGATGACGAACAACAGATTGTTGATGTCACTGGTGGTTTA
GAACCTGAACATGATGATGGCGATGCTCTTCAGCAAGATACAGAgAATGT
TTGATGATCAAATGTAC Run BLAST on NCBI transcript from alignment at sc0003465:4019..7139+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042508 ID=TCONS_00042508|Name=TCONS_00042508|organism=Clytia hemisphaerica|type=transcript|length=3121bp|location=Sequence derived from alignment at sc0003465:4019..7139+ (Clytia hemisphaerica)
TTATTGAAAGTGATGACGAACAACAGATTGTTGATGTCACTGGTGGTTTA
GAACCTGAACATGATGATGGCGATGCTCTTCAGCAAGATACAGAGTGAGT
GATTCTTACAAATCCCTAAATTGCAGCAGCAatttttactgcaattgcgg
tataaaaattgcttttaaatttttcacataCCCAGGCAGTGTCAATTGAA
CTCTCTGATTATCTAACTAattgaacttaatcgaaccttatcaaacgata
gctgttcgatttaccgaacccaatcgaacacctaGATCGAACtgagaaaa
cttttgtaaagtttgatGACTGTTCCATAGACCAGACCCAATTAATCaac
aggccatttttcatgcccttttagcgtcCGGTCATTGGACCCTGCCCCGC
TTAAAgtcactaaaattttggtaaaaacagccatTTAAGTGGAAAAACAC
AAGagaaagtgccctttttggccaccaacggacactgccctgcctttcta
aaatatggtcTGATCAAActtgtcaaaccaatcgaacaagttcaaacatc
gaacgattaaagttcgattaacaAAATTAatcgaaatctaaaatttttaa
aagattgagagtgttcgattaagttcgaccaATGGGTTTTGGTTCGATCA
Gtttgataaaccaattttgttcgacaagttcggaatgtaaatcgggaaat
tacttccgataacggattacacacaTATTTCCTGTATCCCTTTAGCGCCA
GAGtcggtttgttggggcgtagtattccgccactcggccacgcgcgaaat
cgcaacagaggggctacggactttattccggatagataaatatccgggta
caataaacgtcaagatgttaagtccgggaactgtcgaaatggcaatcacg
tgccaggacaaagtttttgcaagcgagggaagatatgacatgaggattta
atatcatcaaactaatcaaactttttactgaccgaactaatcgaactgct
attgcttcaaaaattgtaagTGTTcaattaggttcgattaatttttttaa
tcaaactttaatcgttcgatggagttcgattagtttgattgttcgattgt
tcgattggttcgacaagttcgattgatcgggtctggcaTAGAactttttg
cctttccatctgccatattgaattgtatgcaaaaattatggtggccgaat
tgctgtggtgaaattcccttagaaagtatgcaaaacatatgcaaaaggaa
gtattaatataaaacttacatgcataattggcattatattaaagtgtaat
cttgttgaaggaagattaaatttgcttctcttgaaatctaaaaataatta
tattcactcatctcttagaacaagcacttcaaaaaaaccataacattaga
cataaataAACTCAAGCTAAAAAATCACAAGCGAAGGTacaaaaacaatc
cttattcggctgacggtaaattattctcctgggaatagcaCCGCCGAATG
AtcaaacagttagtcacactagcgttctgtcaaaatgcaggttctGTTGA
CACCGCCTGGACATACAGCAAATTGCAATATTATGGCCACAATGACAAAG
ACTTTTGTTCGCATTGTCTGACCAACTTcttaattttctgattattttga
gTCGGGCAGTCATGGAAAAAAGAGccattaattttaaatttccgATATAT
TTGAATTCTACCCGACCccatattttgaaatcttttttttgccGACCATC
CGACTCATTTTGTTTTACNATATTTGAATTCTACTCGACCccatattttg
aaatctttttttttgtcaaccATCCGACTCATTTTGTTTTACCAAAAAAT
GATGCGAACAGaagttatttgtgattgtggcctatataccttaagtggat
aaatttttgcgtggattaatttttgtggttttcgcgaattttgaccattt
ttgcaaaaattttaagGCCTTTGATTTGCGAAGATTAGTCCATGCGAAAT
TATTTAGAACTCTACAACCAAGAAAATAAAAGTTTGGGAAATCTAGATAA
CATGAAAGCTTTTGAGTGAACTTTGTCTGCctttgttcgattaaaaaaca
aatctcttttctaGTTACAATTTATAAAGTCGCGAAATTCAATCCACGCG
ATAATTTTAAAAGACCCTTggttcgcaaaatttaatccacgcgaaatctt
taaattctcgTCTCGCAAAAATTAGTACAGGCAAAAaattatccacttaa
ggtataagAAACataattcaagattcaaggagaaaataGGCAATTTTTCT
ATCTTTAGCTAAAATGAAccgacaaaatattttttccgtatacTGTATCA
GATTCTTTTGATACCCGTTTAAGCcttgcagtataccgcaattgagggaa
tTCCCTGACTGATATCACATACATTTTAGTAATTGTGTGAAATGCAGAAT
TGCAGGTGTTTTCAACCTTGCCAGTAAACTACTTCTACAGTAAGCTACTG
TAGGAGTACTCTCTagtcttgaaataaaaaaagcagTACCAGGCtgaact
taaaaaattgttagtTGCCGTCACCTAACTGACCCTACCTcaaaacctgc
cgacccaaaaaattttattgccattttaaagaagattttttttccttcaa
aaacttgaaaaactcaaaaatcaaaatttgtatcttgtttgtctcaagca
taagaatcgtaaattccctgctagcacttctgttttttattcaaaattac
ctaaatgtaaacaaactgataacccttccatggacaaaaattgccaaaat
aaaaaaaaattccgaccaACCCACcttcaaaatctagggtcgggtgaggg
caaaccaacaattttttaagcccagcccCAGCTAGATATATAtcgattct
ttttttaaattgaagcaAATTATAGGTCCTGCTTTTATATATCATCACAA
CTCATTGTTGGTGCATTTTTATGTAAGCAAAACTTGAGTTCATATTTTTG
TCTGATTGTATGTTTGATGGCTTTTTGAAAGGAACTGTAACCCTCAATGT
AAATATAATTcggataaaatcaaagaatgaatgactaatttttcataggA
ATGTTTGATGATCAAATGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042508-exon-sc0003465-1491911889:4019..4112 | TCONS_00042508-exon-sc0003465-1491911889:4019..4112 | Clytia hemisphaerica | exon |
| TCONS_00042508-exon-sc0003465-1510915933:4019..4112 | TCONS_00042508-exon-sc0003465-1510915933:4019..4112 | Clytia hemisphaerica | exon |
| TCONS_00042508-exon-sc0003465-1575043694:4019..4112 | TCONS_00042508-exon-sc0003465-1575043694:4019..4112 | Clytia hemisphaerica | exon |
| TCONS_00042508-exon-sc0003465-1491911889:7117..7139 | TCONS_00042508-exon-sc0003465-1491911889:7117..7139 | Clytia hemisphaerica | exon |
| TCONS_00042508-exon-sc0003465-1510915933:7117..7139 | TCONS_00042508-exon-sc0003465-1510915933:7117..7139 | Clytia hemisphaerica | exon |
| TCONS_00042508-exon-sc0003465-1575043694:7117..7139 | TCONS_00042508-exon-sc0003465-1575043694:7117..7139 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003465 | supercontig | sc0003465:4019..7139 + |
Blast
The following BLAST results are available for this feature:
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