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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042507 ID=TCONS_00042507|Name=TCONS_00042507|organism=Clytia hemisphaerica|type=transcript|length=1264bp
gataacttttgacttaaacaaaaaatttgtctacatccaaaggactttta
ttgcgttcagctacagcttaaccggcgtgcgacgccgggtaccggctagt
gaTTGATATATTACTTGAATTGCATTTTAATAGAACAGGCACGCAAAAGG
GACAATAAAAATGTCCAactttttatttatatattatggtgttgcttttt
ttgttttggttggtGGTTTTTGGTGGGGTGGATTTATTGGCTATATTAAC
TACCCAGCTGAAACAGGTTTCGTCACTGGAGTCTATATTATCTTCCATTT
ATTTGATggaatttttgcatttttttgtcgACACAAAACTAACTTAAAAT
GGAAACGTCTGAAGGTCCTGTAATGGCAGTTTTGTTTGGCTTTGCTTGGA
ACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCGGAGCATGGGC
TGTGTTGTCATTCGGTCACACAGTTATTGCAGCCATTATGCTATATCGTG
ATGACAGTTTAAGATTAACTTTTGGAGGAAGCCATGAAAGAAAGATTGCT
TGGGAagacaaaatcaaacaaaatataCGAGCAGCGCCTGAAGTTATAAC
AAATTGTGAAGTGAGAGAACCAAAACCGatctggaaattttggaaaacaa
GAAAAGTCATTTGGAGAGAAAATAAGACTTACAAATATAAACATTGGATT
GATTTGAGCCTGGTAGTTTTGTTTaagaatattgaaaaggagcAGAATAT
TCGGAAGATTGAATTCGATATTCAATTTGATGACGAGGAAACAGAAAAAT
CATATCAACGACATGTTCAAAATCTTTTGGATGAGTTACCTGAAATGTGT
CGGAATGGTGTGATCGAAACAAAACGTATAATCAAAGTGGATGGAATCAA
CATTGAGAGAGACATTGTCATGAATCTACATTCCCCTGGTCTTGAAGAAC
TTCTAGAAAAGCATCTTTGGTTAGTGGTTTTGTCTATGCCTTTCAGCATC
CTAAAAATCATCGAATGGTTAATCGTTAGAATGGCTATTGAACCCTTTTT
ACAGAAAGTGACCATCAGAAAAGTAGTTTCGATCAAAGATATTGAGGTCA
TATAAACCTTACTTAACTTCACGTCATGTATTTTGCTTCGGCAAATGGTA
AAAATATAGAATAGATTAACATATCTTTTTTATTAATATTAGATCACGTT
TTTATAatcatgataatttttttttatcattcacTCGCTTAGCTATTCTA
AAATAATGTGGTTT Run BLAST on NCBI protein sequence of TCONS_00042507-protein >TCONS_00042507-protein ID=TCONS_00042507-protein|Name=TCONS_00042507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MKSIFGAWAVLSFGHTVIAAIMLYRDDSLRLTFGGSHERKIAWEDKIKQN
IRAAPEVITNCEVREPKPIWKFWKTRKVIWRENKTYKYKHWIDLSLVVLF
KNIEKEQNIRKIEFDIQFDDEETEKSYQRHVQNLLDELPEMCRNGVIETK
RIIKVDGINIERDIVMNLHSPGLEELLEKHLWLVVLSMPFSILKIIEWLI
VRMAIEPFLQKVTIRKVVSIKDIEVI Run BLAST on NCBI transcript from alignment at sc0003464:5927..9915+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042507 ID=TCONS_00042507|Name=TCONS_00042507|organism=Clytia hemisphaerica|type=transcript|length=3989bp|location=Sequence derived from alignment at sc0003464:5927..9915+ (Clytia hemisphaerica)
gataacttttgacttaaacaaaaaatttgtctacatccaaaggactttta
ttgcgttcagctacagcttaaccggcgtgcgacgccgggtaccggctagt
gaTTGATATATTACTTGAATTGCATTTTAATAGAACAGGCACGCAAAAGG
GACAATAAAAATGTCCAactttttatttatatattatggtgttgcttttt
ttgttttggttggtGGTTTTTGGTGGGGTGGATTTATTGGCTATATTAAC
TACCCAGCTGAAACAGGTTTCGTCACTGGAGTCTATATTATCTTCCATTT
ATTTGATggaatttttgcatttttttgtcgACACAAAACTAACTTAAAAT
GGAAACGTCTGAAGGTCCTGTAATGGCGTAAGTGTACATAAAGTTTCCCT
GtgtaatctttttatttttataacgCTCCTAAAAGTAAATGTACCAGATG
CAGCTTTAGATTCACTGCATTTTTTTAGGCTCCCAAAATATCTATTGTTC
ATTGTCCTCAGGAAGGAAGCTATGTCCATGGTGCTAAAGACCTTAATCTG
GGTTCCAAAGCCGCTTGCAAAACTTCTTAATTTTACTGAGAGGACTGAGT
TGAAGTTTCCAAGGACCTTTAGTTCATTTTACACTTTTGAATTGATCAGT
CAGCAACATTATATCGAATCGGCTAGAGCTACCATAGTGAAATTTAGTTC
CCAAAACGttatatctgaaaaaaaaaaaataaactccaggtctactttaa
tgggataaactttcgcagggattaaatttcgtggatttcgcggatttggc
tGTCATCCgcaaaaatccgcgaaatcaagtcccaatggaaatttggaagg
gcctcatctgcgaaatatttctaaacaaatctcaaaaaatgtcaaataaa
tttgaatggttacttgcatcaaagaggcgcaaataatgtgtatttcaaca
acctaCATGTATGATTTGACAATTAACAAttaaagtcacaaaatcgtgaa
aatattgacacacAAATTTTCTCAGATaagcccaaccgcgaaattcaatc
cccacaaaagtttatcccatttgACCACGCATTCATCTCTGGGAAGTATC
TGCCGAATCAGtgaaaaaatagacaaaaatggTATTGAGAAGAAAATACT
CTCCTTATTCATATATTCAACAAAGACGATGAGTTATTTGCCTTTTCTTT
AGTACCATTTCCGGAGTGCTTAAAGCCAATTATCTCAAACAGGAATCTTG
TTTCTTATCCAATTTGGAAACTAAAGATCTTTTCGGAAAATTTCCACTTT
CttgttcgggaaatatttcccgttaaggtgGCCATCCactggaaattgaa
aaatcgacctTTTAACTTTAAATGTTGATTACTCAATAACTATAAATGAT
ATGGGCTTGAAACTTCCAGGTATTATTATTTATGACCTAAagttaatatt
aaaaaaaaatttgaaaaaaaaaattggaagacgGGGGTTTGGTACGACtt
ttcagtaaaatcaaaataatcttgTGTCAACGTTTTAGAGAGAACTACAA
ATACTTGGTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGGCACTTTGGGACAAAGAATGGAATgagcgaaattttttttt
gaaaaatccaaaatccgggggtaaaagccaaaaaaacagttttttcaaaa
tatgagatCTGAAATTAGTTAAATCTGAAAAAACCTTCGCTCATTCCACA
GCTCTCGTAGATGTGGAAATACCCTGAAAAAATCAGACCAATCGGACAAC
TACATCCTGAGATTTTTCCGCCACAGTGATTGCGAACCCCCAGATTTGCG
TTTTGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCATTTCCAGAAA
AccgcaaaactttgaaaaaagaccGCAAAACTCATTTTCACCACAAAAAC
CACCCCGAAATGTAAATAACAATGCCCACATTCATTGTAAGGCTATCTTG
GACTATTCCTATCAGCAGGGAATCAATTAagttaaaatattcattcaaaa
agCTCTGGAACTGAAGGCTCATTATCGTGTTACagggcactttcactttc
actttcatgcCATCGCCGAAAACACATGAAACCGCCACAATCTAATCCCA
cacatttgaaaaagtaatttgaagatgattgtgttgttttttaagagatt
cctgtcaaaaaaacattaaaatagcacccaaaaaagaataaacaagcaaa
caaaagttCTACATACCTTTGGCGCACTACACAAACAACCGACCGTGCtc
ttaatcaaaagaaatcacaaGTTACATCATGATTAAATATTCCTTAGAGC
TTTACAAACCTCCTTGTATAATAAGAGAACCATAAAACATCATTTACAGC
AATCAATGTGGATGAAACACTCAGCAAAAGTAAGTAAGCTTCATCCTCCA
AAAAACCATCTTTCTGTCTTTAAAATTCACCTCAAAATTCGAGGGCGGTC
ATTGTTTACaacatttgaaaactgaatatgGGTACACCAAGCGACTTCAA
ACCTTCTAGAAATGTTTCTAGCGACTTAAAGACGACCCGTAAAGATTTTC
AAGCCGTTCGAGCTGCTAGAGAAGGTAGAATTGCTGTTTTACTAACGGGC
GGGAAACAAGGGCGCCTGTGGGCGaagcattaaaagcttaaaGGTAGGTG
ttttaaaacctaaaattttctgcttattctttacttttatgaattgaaat
tttcagaggttATTCCAGAGAAGTTATACTTGactttaagccaaaaaaat
aaaaaaccaccAAAAAAGTATCACTATTTTCAAACTCAGTGGATGGCCAC
CTTAAGTTAATACTTACTATTTCCGTATAATGTTGCTGACTGGTTGTGGA
TATAGGGCAGATTCATATAGGTATAATAAAACTTCTTTTCTCTCTGTTTT
AGAGTTTTGTTTGGCTTTGCTTGGAACCCTTTGTATTGAGTCGTCGATTA
TGAAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTCGGTCACACAGTT
ATTGCAGCCATTATGCTATATCGTGATGACAGTTTAAGATTAACTTTTGG
AGGAAGCCATGAAAGAAAGATTGCTTGGGAagacaaaatcaaacaaaata
taCGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTGAGAGAACCAAAA
CCGatctggaaattttggaaaacaaGAAAAGTCATTTGGAGAGAAAATAA
GACTTACAAATATAAACATTGGATTGATTTGAGCCTGGTAGTTTTGTTTa
agaatattgaaaaggagcAGAATATTCGGAAGATTGAATTCGATATTCAA
TTTGATGACGAGGAAACAGAAAAATCATATCAACGACATGTTCAAAATCT
TTTGGATGAGTTACCTGAAATGTGTCGGAATGGTGTGATCGAAACAAAAC
GTATAATCAAAGTGGATGGAATCAACATTGAGAGAGACATTGTCATGAAT
CTACATTCCCCTGGTCTTGAAGAACTTCTAGAAAAGCATCTTTGGTTAGT
GGTTTTGTCTATGCCTTTCAGCATCCTAAAAATCATCGAATGGTTAATCG
TTAGAATGGCTATTGAACCCTTTTTACAGAAAGTGACCATCAGAAAAGTA
GTTTCGATCAAAGATATTGAGGTCATATAAACCTTACTTAACTTCACGTC
ATGTATTTTGCTTCGGCAAATGGTAAAAATATAGAATAGATTAACATATC
TTTTTTATTAATATTAGATCACGTTTTTATAatcatgataattttttttt
atcattcacTCGCTTAGCTATTCTAAAATAATGTGGTTT Coding sequence (CDS) from alignment at sc0003464:5927..9915+ >TCONS_00042507 ID=TCONS_00042507|Name=TCONS_00042507|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0003464:5927..9915+ (Clytia hemisphaerica)
ATGAAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTCGGTCACACAGT
TATTGCAGCCATTATGCTATATCGTGATGACAGTTTAAGATTAACTTTTG
GAGGAAGCCATGAAAGAAAGATTGCTTGGGAagacaaaatcaaacaaaat
ataCGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTGAGAGAACCAAA
ACCGatctggaaattttggaaaacaaGAAAAGTCATTTGGAGAGAAAATA
AGACTTACAAATATAAACATTGGATTGATTTGAGCCTGGTAGTTTTGTTT
aagaatattgaaaaggagcAGAATATTCGGAAGATTGAATTCGATATTCA
ATTTGATGACGAGGAAACAGAAAAATCATATCAACGACATGTTCAAAATC
TTTTGGATGAGTTACCTGAAATGTGTCGGAATGGTGTGATCGAAACAAAA
CGTATAATCAAAGTGGATGGAATCAACATTGAGAGAGACATTGTCATGAA
TCTACATTCCCCTGGTCTTGAAGAACTTCTAGAAAAGCATCTTTGGTTAG
TGGTTTTGTCTATGCCTTTCAGCATCCTAAAAATCATCGAATGGTTAATC
GTTAGAATGGCTATTGAACCCTTTTTACAGAAAGTGACCATCAGAAAAGT
AGTTTCGATCAAAGATATTGAGGTCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042507-exon-sc0003464-1491911889:5927..6303 | TCONS_00042507-exon-sc0003464-1491911889:5927..6303 | Clytia hemisphaerica | exon |
| TCONS_00042507-exon-sc0003464-1510915933:5927..6303 | TCONS_00042507-exon-sc0003464-1510915933:5927..6303 | Clytia hemisphaerica | exon |
| TCONS_00042507-exon-sc0003464-1575043694:5927..6303 | TCONS_00042507-exon-sc0003464-1575043694:5927..6303 | Clytia hemisphaerica | exon |
| TCONS_00042507-exon-sc0003464-1491911889:9029..9915 | TCONS_00042507-exon-sc0003464-1491911889:9029..9915 | Clytia hemisphaerica | exon |
| TCONS_00042507-exon-sc0003464-1510915933:9029..9915 | TCONS_00042507-exon-sc0003464-1510915933:9029..9915 | Clytia hemisphaerica | exon |
| TCONS_00042507-exon-sc0003464-1575043694:9029..9915 | TCONS_00042507-exon-sc0003464-1575043694:9029..9915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003464 | supercontig | sc0003464:5927..9915 + |
Blast
The following BLAST results are available for this feature:
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