TCONS_00042506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042506
Unique NameTCONS_00042506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042506 ID=TCONS_00042506|Name=TCONS_00042506|organism=Clytia hemisphaerica|type=transcript|length=521bp
GAAGCTATGGAAGTCTTATACCCTATCAAGCCTTTTACTTTGGTGTTTTG
GCACTTATTGTCAATGGGAAAATAGGTGCTAAAAAGGTGCTCTAAAAAGG
GCCCCACGATAGGAAAATGTGTGCCTTTTAACAATAGGCTGCTTTAATTG
CCATCCCTCTATGAGAATCATTGGTCAGATAGACAACTTCCTGGGTTTTT
AGCTCTGATTTAGATCATTTTCCGAAACACATGCAAATGCTAAAATTTGC
TCCTAACCGGTCCCTACAACAGCCAGAATTTTGGGAAAAGAACTTTTTGG
GGTCCTATCATCACTACTAACATCCCGTGNTTTCCGAAACACATGCAAAT
GCTAAAATTTGCTCCTAACCGGCCCCTACAACAGCTAGAATTTTGGGAAA
AGAACTTTTTGGGGTCCTATCATCACTACTAACATCTTGTGAAAATTTTG
GACCTCCAAGTTAtcccaatcaaaatttagcttttttgaaaatgccaaaa
acgaaacaattaaaaaacatg
Run BLAST on NCBI

transcript from alignment at sc0003463:9..529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042506 ID=TCONS_00042506|Name=TCONS_00042506|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at sc0003463:9..529 (Clytia hemisphaerica)
catgttttttaattgtttcgtttttggcattttcaaaaaagctaaatttt
gattgggaTAACTTGGAGGTCCAAAATTTTCACAAGATGTTAGTAGTGAT
GATAGGACCCCAAAAAGTTCTTTTCCCAAAATTCTAGCTGTTGTAGGGGC
CGGTTAGGAGCAAATTTTAGCATTTGCATGTGTTTCGGAAANCACGGGAT
GTTAGTAGTGATGATAGGACCCCAAAAAGTTCTTTTCCCAAAATTCTGGC
TGTTGTAGGGACCGGTTAGGAGCAAATTTTAGCATTTGCATGTGTTTCGG
AAAATGATCTAAATCAGAGCTAAAAACCCAGGAAGTTGTCTATCTGACCA
ATGATTCTCATAGAGGGATGGCAATTAAAGCAGCCTATTGTTAAAAGGCA
CACATTTTCCTATCGTGGGGCCCTTTTTAGAGCACCTTTTTAGCACCTAT
TTTCCCATTGACAATAAGTGCCAAAACACCAAAGTAAAAGGCTTGATAGG
GTATAAGACTTCCATAGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026333XLOC_026333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042506-exon-sc0003463-1491911889:9..529TCONS_00042506-exon-sc0003463-1491911889:9..529Clytia hemisphaericaexon
TCONS_00042506-exon-sc0003463-1510915933:9..529TCONS_00042506-exon-sc0003463-1510915933:9..529Clytia hemisphaericaexon
TCONS_00042506-exon-sc0003463-1575043694:9..529TCONS_00042506-exon-sc0003463-1575043694:9..529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003463supercontigsc0003463:9..529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58813	0.410707	1.30567	1.36211	0.467764	1.13677	0.80222	0.553816	0.41918	0.244268	0.889252	1.65463	1.50118	0.186705	0.494096	0.918493	0.205849	0.981775	0.956321	1.00752	0.619155	1.67066	0	0.917843	1.05428	2.27975	0.570587	0.313222	0.471868	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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