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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042501 ID=TCONS_00042501|Name=TCONS_00042501|organism=Clytia hemisphaerica|type=transcript|length=1227bp
NNCACTTAGTGGTAGAAAACCGTGACGGGATAGACCCAGACCAGTATGTA
TTGTTGTACCATCAATATTGATTGCAGCAACACCGGTTGGTGCCAATCGC
AAGATTTTGACTTTAGAAGTGTCACCTTTACGACAAAGAAGCTTGTTTAA
AACATCATACAGACATTTAAGAAGATAACTTTTTCCACATCCACCAGCTG
CAGTTAAAAAGATACGAAGTGGCTCAATTTCTTCCGGAGATTCTAAATTC
TTGTTTTGTACATATCGTTTAATTGACATATAGACAACATCAAAGATTTC
TCGTTGCTTTTCGTTCAAAGACTCAATGTTCAACCTCAATTCTTCCTCTG
AAAAAGTTGTACTATGAACAGCAGCTGGAGCTAAATTGGCCAAAGCTTCA
TCATCAATAAGCAGTTCTTCCTCAATATCTGCATTGTTATCTAATTCCTC
ATTTAGCAGATTAAATACTTCGTCATTCTCTTGTTGGGCGAAAGCGTTCT
GATTTGTTAATAAATCACTCCGATAGTTTTGTAAGGCACTTTCAACCAAC
TCGGAGTTTGGctcaaaaatttctctgtttCTATTGACTTTTTCTAAAAC
ATCAGGACTGGACAATTTCAGCATATATATATGAGCCGTCTAATTTGAGA
TCTTCTTCTTTGCGAAAGGGataaaacaacatcaaaaggTGATGATAGCA
TACTTCTCTGGGTATAAATGACGATTTGGTGTGTATGTTCGGAGAACTTT
TCTCACTTTACGACATCTCATACATTCTTTAGAATTCATTAGGGGAATTT
TCTTAGGAAGCGGGTTTTCAACATGGTTTTCTTCAACAACAGTGTCATCA
AGCACATTAGGCTGACTGTCATTTATAAGTTctgcataattaattttttt
atcaagttCAAAGTTGCTGCAAAATTGTGCATAACATAAACTATCAATTT
CTCTGTATTTTCCGTTTGAAAAAGTTCTATTGGGTCGATCAATATATCTA
TCCAGtatgtttttcttgaaaacatcTTCACTATCCTCAGGAAGCTCAGC
CAATTTCTCCTCAGACTTGAACATATGAAAACGCTCCTCTGGTAAATTAA
TATTTACAAACATGACCTGAGGGTATCCTTTGCGCAACCAAAGTTCAGGC
ATCAATTGATAGACAGCTTCTTGAACAGAACATTCTCTGTTATCACTGTA
TGCTTGAGCTAACTTTTGCATTGTTTN Run BLAST on NCBI protein sequence of TCONS_00042501-protein >TCONS_00042501-protein ID=TCONS_00042501-protein|Name=TCONS_00042501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MLKLSSPDVLEKVNRNREIFEPNSELVESALQNYRSDLLTNQNAFAQQEN
DEVFNLLNEELDNNADIEEELLIDDEALANLAPAAVHSTTFSEEELRLNI
ESLNEKQREIFDVVYMSIKRYVQNKNLESPEEIEPLRIFLTAAGGCGKSY
LLKCLYDVLNKLLCRKGDTSKVKILRLAPTGVAAINIDGTTIHTGLGLSR
HGFLPLSX Run BLAST on NCBI transcript from alignment at sc0003459:7413..8639 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042501 ID=TCONS_00042501|Name=TCONS_00042501|organism=Clytia hemisphaerica|type=transcript|length=1227bp|location=Sequence derived from alignment at sc0003459:7413..8639 (Clytia hemisphaerica)
NAAACAATGCAAAAGTTAGCTCAAGCATACAGTGATAACAGAGAATGTTC
TGTTCAAGAAGCTGTCTATCAATTGATGCCTGAACTTTGGTTGCGCAAAG
GATACCCTCAGGTCATGTTTGTAAATATTAATTTACCAGAGGAGCGTTTT
CATATGTTCAAGTCTGAGGAGAAATTGGCTGAGCTTCCTGAGGATAGTGA
AgatgttttcaagaaaaacataCTGGATAGATATATTGATCGACCCAATA
GAACTTTTTCAAACGGAAAATACAGAGAAATTGATAGTTTATGTTATGCA
CAATTTTGCAGCAACTTTGaacttgataaaaaaattaattatgcagAACT
TATAAATGACAGTCAGCCTAATGTGCTTGATGACACTGTTGTTGAAGAAA
ACCATGTTGAAAACCCGCTTCCTAAGAAAATTCCCCTAATGAATTCTAAA
GAATGTATGAGATGTCGTAAAGTGAGAAAAGTTCTCCGAACATACACACC
AAATCGTCATTTATACCCAGAGAAGTATGCTATCATCAccttttgatgtt
gttttatCCCTTTCGCAAAGAAGAAGATCTCAAATTAGACGGCTCATATA
TATATGCTGAAATTGTCCAGTCCTGATGTTTTAGAAAAAGTCAATAGaaa
cagagaaatttttgagCCAAACTCCGAGTTGGTTGAAAGTGCCTTACAAA
ACTATCGGAGTGATTTATTAACAAATCAGAACGCTTTCGCCCAACAAGAG
AATGACGAAGTATTTAATCTGCTAAATGAGGAATTAGATAACAATGCAGA
TATTGAGGAAGAACTGCTTATTGATGATGAAGCTTTGGCCAATTTAGCTC
CAGCTGCTGTTCATAGTACAACTTTTTCAGAGGAAGAATTGAGGTTGAAC
ATTGAGTCTTTGAACGAAAAGCAACGAGAAATCTTTGATGTTGTCTATAT
GTCAATTAAACGATATGTACAAAACAAGAATTTAGAATCTCCGGAAGAAA
TTGAGCCACTTCGTATCTTTTTAACTGCAGCTGGTGGATGTGGAAAAAGT
TATCTTCTTAAATGTCTGTATGATGTTTTAAACAAGCTTCTTTGTCGTAA
AGGTGACACTTCTAAAGTCAAAATCTTGCGATTGGCACCAACCGGTGTTG
CTGCAATCAATATTGATGGTACAACAATACATACTGGTCTGGGTCTATCC
CGTCACGGTTTTCTACCACTAAGTGNN Coding sequence (CDS) from alignment at sc0003459:7413..8639 >TCONS_00042501 ID=TCONS_00042501|Name=TCONS_00042501|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0003459:7413..8639 (Clytia hemisphaerica)
ATGCTGAAATTGTCCAGTCCTGATGTTTTAGAAAAAGTCAATAGaaacag
agaaatttttgagCCAAACTCCGAGTTGGTTGAAAGTGCCTTACAAAACT
ATCGGAGTGATTTATTAACAAATCAGAACGCTTTCGCCCAACAAGAGAAT
GACGAAGTATTTAATCTGCTAAATGAGGAATTAGATAACAATGCAGATAT
TGAGGAAGAACTGCTTATTGATGATGAAGCTTTGGCCAATTTAGCTCCAG
CTGCTGTTCATAGTACAACTTTTTCAGAGGAAGAATTGAGGTTGAACATT
GAGTCTTTGAACGAAAAGCAACGAGAAATCTTTGATGTTGTCTATATGTC
AATTAAACGATATGTACAAAACAAGAATTTAGAATCTCCGGAAGAAATTG
AGCCACTTCGTATCTTTTTAACTGCAGCTGGTGGATGTGGAAAAAGTTAT
CTTCTTAAATGTCTGTATGATGTTTTAAACAAGCTTCTTTGTCGTAAAGG
TGACACTTCTAAAGTCAAAATCTTGCGATTGGCACCAACCGGTGTTGCTG
CAATCAATATTGATGGTACAACAATACATACTGGTCTGGGTCTATCCCGT
CACGGTTTTCTACCACTAAGTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042501-exon-sc0003459-1491911889:7413..8639 | TCONS_00042501-exon-sc0003459-1491911889:7413..8639 | Clytia hemisphaerica | exon |
| TCONS_00042501-exon-sc0003459-1510915933:7413..8639 | TCONS_00042501-exon-sc0003459-1510915933:7413..8639 | Clytia hemisphaerica | exon |
| TCONS_00042501-exon-sc0003459-1575043694:7413..8639 | TCONS_00042501-exon-sc0003459-1575043694:7413..8639 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003459 | supercontig | sc0003459:7413..8639 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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