TCONS_00042498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042498
Unique NameTCONS_00042498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042498 ID=TCONS_00042498|Name=TCONS_00042498|organism=Clytia hemisphaerica|type=transcript|length=225bp
NTCACCCTCGACAGAAACGTATGAATAATACCTTGTCAATTATAAATCAT
ATTTTGGATATTGAATTGCATTATAATCcttTACACTTAGATGCACATTC
ATTTGTCACGAAAACTCAGCAAAGTCGAATACTCATTACACGTTTATCAA
TCTTCACGAATCGTTATTCATTCTTCATGATAAACATGCTGCATaaagtt
aaaaacaaatatcaaaataaaggtC
Run BLAST on NCBI

transcript from alignment at sc0003459:11074..11648+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042498 ID=TCONS_00042498|Name=TCONS_00042498|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0003459:11074..11648+ (Clytia hemisphaerica)
NTCACCCTCGACAGAAACGTATGAATAATACCTTGTCAATTATAAATCAT
ATTTTGGATATTGAATTGCATTATAATCGTGAGTATAACAAAGTTTAACT
ATTCAATTTCTAGTCATCTTTTTTCACTAtgaagaaattggaaaaatgct
tttgaaaatttcataagGGTATAAGGTTCCTTATTGTTCCGAACATACAT
CTTGAAATTTCTGTCTGCCACTTTTgataaattatataaattaaaTCTTA
GCTTAGTTGGGAAAGTAATCGCCCTCCAAGCGAGAGGTCGTAAGTTCAAT
CCCtcactcgattcgttacctttgagagaatgggaagtacattagtgcgg
AATCTATCGACTCTTATAAacgtttattttcttttatcaaaaatcctgta
atttcattgttttttttttcattttaagcttTACACTTAGATGCACATTC
ATTTGTCACGAAAACTCAGCAAAGTCGAATACTCATTACACGTTTATCAA
TCTTCACGAATCGTTATTCATTCTTCATGATAAACATGCTGCATaaagtt
aaaaacaaatatcaaaataaaggtC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026325XLOC_026325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042498-exon-sc0003459-1491911889:11074..11151TCONS_00042498-exon-sc0003459-1491911889:11074..11151Clytia hemisphaericaexon
TCONS_00042498-exon-sc0003459-1510915933:11074..11151TCONS_00042498-exon-sc0003459-1510915933:11074..11151Clytia hemisphaericaexon
TCONS_00042498-exon-sc0003459-1575043694:11074..11151TCONS_00042498-exon-sc0003459-1575043694:11074..11151Clytia hemisphaericaexon
TCONS_00042498-exon-sc0003459-1491911889:11502..11648TCONS_00042498-exon-sc0003459-1491911889:11502..11648Clytia hemisphaericaexon
TCONS_00042498-exon-sc0003459-1510915933:11502..11648TCONS_00042498-exon-sc0003459-1510915933:11502..11648Clytia hemisphaericaexon
TCONS_00042498-exon-sc0003459-1575043694:11502..11648TCONS_00042498-exon-sc0003459-1575043694:11502..11648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003459supercontigsc0003459:11074..11648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	29.8078	13.9731	56.9363	37.8691	8.70671	0	17.6127	17.0155	7.28271	0.0703513	6.83168	3.9379	0	7.02926	13.7971	8.91706	10.8786	0	0	0	0.30595	14.1745	17.024	8.71895	9.81597	1.38387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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