TCONS_00042497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042497
Unique NameTCONS_00042497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042497 ID=TCONS_00042497|Name=TCONS_00042497|organism=Clytia hemisphaerica|type=transcript|length=256bp
TTTGCTTAAACATACATAGATCAAGTTTCAGTAAAATCCTTTAAtttttc
cctgatttttttttgacttagTGCATGACAAGTTAAAACATTTGGACATG
TTCGTTAAAATGCACTACTAAATCAATCatggaaaaattccaaaaaatac
aattttgtgccAAACTTTCTAACTATCACAGGTCTATGAAATTTTTCGAG
GGTATTCTTTAGGTAAGATGGAAGGGATTGTACTGATCAACCAATTACTA
TTTaag
Run BLAST on NCBI

transcript from alignment at sc0003458:6828..7083

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042497 ID=TCONS_00042497|Name=TCONS_00042497|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at sc0003458:6828..7083 (Clytia hemisphaerica)
cttAAATAGTAATTGGTTGATCAGTACAATCCCTTCCATCTTACCTAAAG
AATACCCTCGAAAAATTTCATAGACCTGTGATAGTTAGAAAGTTTggcac
aaaattgtattttttggaatttttccatGATTGATTTAGTAGTGCATTTT
AACGAACATGTCCAAATGTTTTAACTTGTCATGCActaagtcaaaaaaaa
atcagggaaaaaTTAAAGGATTTTACTGAAACTTGATCTATGTATGTTTA
AGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026324XLOC_026324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042497-exon-sc0003458-1491911889:6828..7083TCONS_00042497-exon-sc0003458-1491911889:6828..7083Clytia hemisphaericaexon
TCONS_00042497-exon-sc0003458-1510915933:6828..7083TCONS_00042497-exon-sc0003458-1510915933:6828..7083Clytia hemisphaericaexon
TCONS_00042497-exon-sc0003458-1575043694:6828..7083TCONS_00042497-exon-sc0003458-1575043694:6828..7083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003458supercontigsc0003458:6828..7083 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09382	3.403	0.790243	3.09252	0.94121	1.48751	0	0	0.58814	0.728507	0	0	0.464178	0	0.396313	0.850609	0	0.537022	0	0	1.34962	0	1.60049	1.45508	1.49869	2.00632	0	0	1.54932	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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