TCONS_00042496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042496
Unique NameTCONS_00042496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042496 ID=TCONS_00042496|Name=TCONS_00042496|organism=Clytia hemisphaerica|type=transcript|length=805bp
NAGCAATGTGATACGccaaaagaaagctctttttacgcccttttcgagcg
tcaaaatattattttccgtggcattacgtcatccttaaaattaaagatgg
taacttcagtagtgtaacacatcaaaacaagctgaaaagcaagctgtaag
catgattctgcagatttcttggcaagtcttagatcaaaacttaatttctt
tgatggaaatgattTGTTTAAATGAAGAATAGACTCTAAAGAAGCCATAA
AGTTGCTTTACATTGGTTATGTTTGCTGGATTTCTacgaaaaacatttaa
gttgccgccattttgttttgagcagGAGGTGTGCTTTTGGTGGCTCACAT
AATGTTTTGTAGTGGATTTAAATGTaactgagatatttccaagcacaaca
tgatgtaacagagATAGAAATGTGCATTATANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNagcacaacatgatgtaacagagatagaaatgt
gcattataatgaactggaccTAACTTCTGGAGACGCACATTCTCATCTGA
CACCCGCCACTCATAACACCCTTCTTTCGGCGGTCAAGCCAGCTCATTGC
TCATTGTCATCTAGTCTATGTGAATAAGAATATGCACACAAAAAGTTTAC
ATGCCTACAGAGAGTGGACTTTCAATGAACATTTTGACACACTTATATGG
cttttttcacccaaatttgatgttatcgCAAGATTACCGCAAACTTTGCT
ATGTA
Run BLAST on NCBI

transcript from alignment at sc0003458:1..805

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042496 ID=TCONS_00042496|Name=TCONS_00042496|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0003458:1..805 (Clytia hemisphaerica)
TACATAGCAAAGTTTGCGGTAATCTTGcgataacatcaaatttgggtgaa
aaaagCCATATAAGTGTGTCAAAATGTTCATTGAAAGTCCACTCTCTGTA
GGCATGTAAACTTTTTGTGTGCATATTCTTATTCACATAGACTAGATGAC
AATGAGCAATGAGCTGGCTTGACCGCCGAAAGAAGGGTGTTATGAGTGGC
GGGTGTCAGATGAGAATGTGCGTCTCCAGAAGTTAggtccagttcattat
aatgcacatttctatctctgttacatcatgttgtgctNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTATAATGCACATTTCTATctctgtta
catcatgttgtgcttggaaatatctcagttACATTTAAATCCACTACAAA
ACATTATGTGAGCCACCAAAAGCACACCTCctgctcaaaacaaaatggcg
gcaacttaaatgtttttcgtAGAAATCCAGCAAACATAACCAATGTAAAG
CAACTTTATGGCTTCTTTAGAGTCTATTCTTCATTTAAACAaatcatttc
catcaaagaaattaagttttgatctaagacttgccaagaaatctgcagaa
tcatgcttacagcttgcttttcagcttgttttgatgtgttacactactga
agttaccatctttaattttaaggatgacgtaatgccacggaaaataatat
tttgacgctcgaaaagggcgtaaaaagagctttcttttggCGTATCACAT
TGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026323XLOC_026323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042496-exon-sc0003458-1491911889:1..805TCONS_00042496-exon-sc0003458-1491911889:1..805Clytia hemisphaericaexon
TCONS_00042496-exon-sc0003458-1510915933:1..805TCONS_00042496-exon-sc0003458-1510915933:1..805Clytia hemisphaericaexon
TCONS_00042496-exon-sc0003458-1575043694:1..805TCONS_00042496-exon-sc0003458-1575043694:1..805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003458supercontigsc0003458:1..805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07375	1.10589	0.296244	0.865387	10.5174	10.303	11.8221	12.6336	8.84368	11.8403	11.5763	7.19377	11.3158	8.42571	5.65082	8.86309	4.75884	6.13052	6.72803	11.3661	2.77794	4.34056	2.26251	4.7362	3.16945	7.70174	7.46737	7.79689	13.5656	8.67915
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top