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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042487 ID=TCONS_00042487|Name=TCONS_00042487|organism=Clytia hemisphaerica|type=transcript|length=1190bp
CCTTGATTAAGAATTACATATATACTCTTGTATTACATGTTATTATTACA
TGTATTAATTATATCACTCtacatttatttttcaaagcgTATGCTATTCT
TTTTCACACGATTTAATTCTGGTCAGTAAATTAAATGGGTACCCCAATGA
GTACCCCAATTGGTGCACCAATTGGGGTAccatgatttttaaaataaccC
CATAAATTCTGAAGTTGCCTGGTCTTTGATAAAAACACCATCTCTTTTCA
CCAACGTTTTAATCTNCCCAAAGCAGCTTCATCGGTGAGCCATCTGTAAA
TTCAAAATCAGGCTTAGATTCAACCATTTTATGCATAAATTCTGAAGTTG
CCTGGTCTTTGATAAAAACACCATCTCTTTTCACCAACGTTTTAATCCTT
TTTTCCAATCGTTTGATGCTCAACTTAAGTTTGGCATTCTCTTGAGAGAC
ATCACTTAACCTTATTTTCAATTGTTTCTTGGACAGTGAAGAATGGGGTC
TTTTCGGTTTAGGCTTGGTTGACGTTAATGATGGTCGTTTTTCAATTATC
AACAGCGATTTTCTTGCTACTGAGCATTTCTCACATCGTTCACTTGTAGC
AGGTCCAAAAATCAGCCCAGGACAATCCTTGTGACGTATGGTTTGCTGGA
GCTTTTCAAATGGTGTAAAATCATTACACTCTAGCCGAGTGTTATCACGT
TGGTCACTGTGACCTTCTTTACGTTTCTCTATAACCTTTGGAACATCATA
ATTTCCTTCACAGATCCGAAATTCCccaacagtttgaaaaaagatttcca
cAGTGTTAACGATGAGAGCTTTTGGTACATCAATATTTAAAGAGGCTATA
TCAATGTTTTGTTCAAAAATGGATATGGTCCATGAAAATTCACCCATCTT
GTTTTTCTGCTGCTCAATAAATATTGTCAAGTGAACAAATGCAGGTGAAA
TAACTGATTCGTCTTTACCACCACAACGATCACATATACGTACAAATGTa
tgttgttttaatttttctgcataagaaaagttgaattttttcccAACTTC
TATCATCTTTGCAAGAGTCAAAAATTCAATTGTGATTAATTTGAACTCAC
ATGGCTCCATACCAGTAGCGgtctggcttaattttcttggtggtgcaaac
tatgaaattggcgcccctggtatttttgtccttatttgcg Run BLAST on NCBI protein sequence of TCONS_00042487-protein >TCONS_00042487-protein ID=TCONS_00042487-protein|Name=TCONS_00042487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MEPCEFKLITIEFLTLAKMIEVGKKFNFSYAEKLKQHTFVRICDRCGGKD
ESVISPAFVHLTIFIEQQKNKMGEFSWTISIFEQNIDIASLNIDVPKALI
VNTVEIFFQTVGEFRICEGNYDVPKVIEKRKEGHSDQRDNTRLECNDFTP
FEKLQQTIRHKDCPGLIFGPATSERCEKCSVARKSLLIIEKRPSLTSTKP
KPKRPHSSLSKKQLKIRLSDVSQENAKLKLSIKRLEKRIKTLVKRDGVFI
KDQATSEFMHKMVESKPDFEFTDGSPMKLLWXD Run BLAST on NCBI transcript from alignment at sc0003455:3490..4679 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042487 ID=TCONS_00042487|Name=TCONS_00042487|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at sc0003455:3490..4679 (Clytia hemisphaerica)
cgcaaataaggacaaaaataccaggggcgccaatttcatagtttgcacca
ccaagaaaattaagccagacCGCTACTGGTATGGAGCCATGTGAGTTCAA
ATTAATCACAATTGAATTTTTGACTCTTGCAAAGATGATAGAAGTTggga
aaaaattcaacttttcttatgcagaaaaattaaaacaacatACATTTGTA
CGTATATGTGATCGTTGTGGTGGTAAAGACGAATCAGTTATTTCACCTGC
ATTTGTTCACTTGACAATATTTATTGAGCAGCAGAAAAACAAGATGGGTG
AATTTTCATGGACCATATCCATTTTTGAACAAAACATTGATATAGCCTCT
TTAAATATTGATGTACCAAAAGCTCTCATCGTTAACACTgtggaaatctt
ttttcaaactgttggGGAATTTCGGATCTGTGAAGGAAATTATGATGTTC
CAAAGGTTATAGAGAAACGTAAAGAAGGTCACAGTGACCAACGTGATAAC
ACTCGGCTAGAGTGTAATGATTTTACACCATTTGAAAAGCTCCAGCAAAC
CATACGTCACAAGGATTGTCCTGGGCTGATTTTTGGACCTGCTACAAGTG
AACGATGTGAGAAATGCTCAGTAGCAAGAAAATCGCTGTTGATAATTGAA
AAACGACCATCATTAACGTCAACCAAGCCTAAACCGAAAAGACCCCATTC
TTCACTGTCCAAGAAACAATTGAAAATAAGGTTAAGTGATGTCTCTCAAG
AGAATGCCAAACTTAAGTTGAGCATCAAACGATTGGAAAAAAGGATTAAA
ACGTTGGTGAAAAGAGATGGTGTTTTTATCAAAGACCAGGCAACTTCAGA
ATTTATGCATAAAATGGTTGAATCTAAGCCTGATTTTGAATTTACAGATG
GCTCACCGATGAAGCTGCTTTGGGNAGATTAAAACGTTGGTGAAAAGAGA
TGGTGTTTTTATCAAAGACCAGGCAACTTCAGAATTTATGGggttatttt
aaaaatcatggTACCCCAATTGGTGCACCAATTGGGGTACTCATTGGGGT
ACCCATTTAATTTACTGACCAGAATTAAATCGTGTGAAAAAGAATAGCAT
AcgctttgaaaaataaatgtaGAGTGATATAATTAATACATGTAATAATA
ACATGTAATACAAGAGTATATATGTAATTCTTAATCAAGG Coding sequence (CDS) from alignment at sc0003455:3490..4679 >TCONS_00042487 ID=TCONS_00042487|Name=TCONS_00042487|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0003455:3490..4679 (Clytia hemisphaerica)
ATGGAGCCATGTGAGTTCAAATTAATCACAATTGAATTTTTGACTCTTGC
AAAGATGATAGAAGTTgggaaaaaattcaacttttcttatgcagaaaaat
taaaacaacatACATTTGTACGTATATGTGATCGTTGTGGTGGTAAAGAC
GAATCAGTTATTTCACCTGCATTTGTTCACTTGACAATATTTATTGAGCA
GCAGAAAAACAAGATGGGTGAATTTTCATGGACCATATCCATTTTTGAAC
AAAACATTGATATAGCCTCTTTAAATATTGATGTACCAAAAGCTCTCATC
GTTAACACTgtggaaatcttttttcaaactgttggGGAATTTCGGATCTG
TGAAGGAAATTATGATGTTCCAAAGGTTATAGAGAAACGTAAAGAAGGTC
ACAGTGACCAACGTGATAACACTCGGCTAGAGTGTAATGATTTTACACCA
TTTGAAAAGCTCCAGCAAACCATACGTCACAAGGATTGTCCTGGGCTGAT
TTTTGGACCTGCTACAAGTGAACGATGTGAGAAATGCTCAGTAGCAAGAA
AATCGCTGTTGATAATTGAAAAACGACCATCATTAACGTCAACCAAGCCT
AAACCGAAAAGACCCCATTCTTCACTGTCCAAGAAACAATTGAAAATAAG
GTTAAGTGATGTCTCTCAAGAGAATGCCAAACTTAAGTTGAGCATCAAAC
GATTGGAAAAAAGGATTAAAACGTTGGTGAAAAGAGATGGTGTTTTTATC
AAAGACCAGGCAACTTCAGAATTTATGCATAAAATGGTTGAATCTAAGCC
TGATTTTGAATTTACAGATGGCTCACCGATGAAGCTGCTTTGGGNAGATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042487-exon-sc0003455-1491911889:3490..4679 | TCONS_00042487-exon-sc0003455-1491911889:3490..4679 | Clytia hemisphaerica | exon |
| TCONS_00042487-exon-sc0003455-1510915933:3490..4679 | TCONS_00042487-exon-sc0003455-1510915933:3490..4679 | Clytia hemisphaerica | exon |
| TCONS_00042487-exon-sc0003455-1575043694:3490..4679 | TCONS_00042487-exon-sc0003455-1575043694:3490..4679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003455 | supercontig | sc0003455:3490..4679 . |
Blast
The following BLAST results are available for this feature:
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