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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042485 ID=TCONS_00042485|Name=TCONS_00042485|organism=Clytia hemisphaerica|type=transcript|length=1651bp
gaaaattaatccccgcgaaatcttaaaatttcgcggatgagctcaaccgc
gaaatttaatccccgcgaaaatttatcccattaaagtaccaACAAACCAT
GGCTTATCGAATTTAGACTTGATGAAAttgaaatagacaaaaatatcaCA
CGCAACACTCAGACTGATGCTACAGCTACAACACACAATCAAACTGCTGC
TACAGCCACAGCACACAATCAGACTGATGTTACAGTCACAACACACAATC
AGACTGATGTTACAGTCACAACACACAATCAGGCTGCTTCAGTCACAACG
CACGATCAGACTGCTGCTACAGCCACAACACACAATCAGACTGCTGCTAC
AGTCACAACACACAATCAGACTGATGTTACAGTCACAACACACAATCAGG
CTGCTTCAGTCACAACGCACGATCAGACTACTGCTACAATCACAACACAC
GATCAGACTGCTGACGATAAAGTTAAAAAGGAGAACAGATTGAAGttcGT
TCATTCGTTGAGTTAGTTCCATTGCTACTACGTATGGATGGTGTCGAATA
TTTCCTGTCCGATAAGATCAATCAGGACCCCGTTGAAGAACATTTCTCCA
AGCACAGGGCTCGACTAGGTGGATCAGACAACCCAACTGTGGAACAGTAC
ATGttaacagaacgaaaattggtgGTTGCGAAATCAGAACTCATACTTAC
GTTAAGAGGTAATTTTCGTGGTAGAAAACGAAAGCAGATTACCATAGATA
TCAACGATGAAAGAACTCTTCCTAAAAAACCGAAAAAACCaaagaaacca
aaacaaaaacaaaagactcaatcaaaataatttacgaACGTTTAGAAATC
ATATTTTTAATTTGCTTCCCCAGGTACTTAATAATTAGTTATTTTATAAC
GATAGGAAAAGTATTTAGTGAAAAGCTTTGAGCACAACGAGCACGATCTT
TACTGATTCCCTAGATGTGATaagaataaaaagataattttcaCTCTTAT
GTTTTTATGATCTGCCATggcatttttaaatatttctttagagatctttc
atttcttttttcttgtaTATATTTGACATCTTTTGCGTTTTTCTTATTGT
GcaaacaattttacaattttgaatgtagatatttttctattttcctaTTT
Gtgtatacagttgacgctctctaattcgacgttctattattcgataagct
cccctTTCCGATGGAAATTTGAAGTCCCTTGAAGATTTTCCGCTCTCTTA
TTCCATTTCTAGCGTGTTAAAAGGCCTTTAGGACGGAGTTCAATCTtaga
actttcaaattttggcgttcgaattagaattttgaaattcgattcctcaa
aacgaaaaaaaaaacagacaaaTATCGAAGATTTCTTCAAAAGAACTTAG
GTTTTCAGCAAGAACTTCGATATTTGTCCTGATTCAAACCATTTGAGTCT
CTCCTATATTTTTCTCCCCCAGGTCTATAATTCGATATCTACCTCGTGGT
TATCGAATTAGGGAGACTTCCCACTATTCGATACCCTCtcgtattcgatg
aaaatccaatttctcttgaaaaacgaattagagagcgtcaactgcatTTC
TTTACTTGtacacaattttatttttaatattagGCTAAAGATGAAATTAC
C Run BLAST on NCBI protein sequence of TCONS_00042485-protein >TCONS_00042485-protein ID=TCONS_00042485-protein|Name=TCONS_00042485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MLQLQHTIKLLLQPQHTIRLMLQSQHTIRLMLQSQHTIRLLQSQRTIRLL
LQPQHTIRLLLQSQHTIRLMLQSQHTIRLLQSQRTIRLLLQSQHTIRLLT
IKLKRRTD Run BLAST on NCBI transcript from alignment at sc0003455:7098..8852+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042485 ID=TCONS_00042485|Name=TCONS_00042485|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at sc0003455:7098..8852+ (Clytia hemisphaerica)
gaaaattaatccccgcgaaatcttaaaatttcgcggatgagctcaaccgc
gaaatttaatccccgcgaaaatttatcccattaaagtaccaACAAACCAT
GGCTTATCGAATTTAGACTTGATGAAAttgaaatagacaaaaatatcaCA
CGCAACACTCAGACTGATGCTACAGCTACAACACACAATCAAACTGCTGC
TACAGCCACAGCACACAATCAGACTGATGTTACAGTCACAACACACAATC
AGACTGATGTTACAGTCACAACACACAATCAGGCTGCTTCAGTCACAACG
CACGATCAGACTGCTGCTACAGCCACAACACACAATCAGACTGCTGCTAC
AGTCACAACACACAATCAGACTGATGTTACAGTCACAACACACAATCAGG
CTGCTTCAGTCACAACGCACGATCAGACTACTGCTACAATCACAACACAC
GATCAGACTGCTGACGATAAAGTTAAAAAGGAGAACAGATTGAAGGTTCA
ATGCATTACTCTCAGACATGTTATATCAGATGTAATCTTGGGTCAAAAGT
TTTCTAGGGTCTATTTATGTTGTAACATCTtgtgatattattttttaagt
tcGTTCATTCGTTGAGTTAGTTCCATTGCTACTACGTATGGATGGTGTCG
AATATTTCCTGTCCGATAAGATCAATCAGGACCCCGTTGAAGAACATTTC
TCCAAGCACAGGGCTCGACTAGGTGGATCAGACAACCCAACTGTGGAACA
GTACATGttaacagaacgaaaattggtgGTTGCGAAATCAGAACTCATAC
TTACGTTAAGAGGTAATTTTCGTGGTAGAAAACGAAAGCAGATTACCATA
GATATCAACGATGAAAGAACTCTTCCTAAAAAACCGAAAAAACCaaagaa
accaaaacaaaaacaaaagactcaatcaaaataatttacgaACGTTTAGA
AATCATATTTTTAATTTGCTTCCCCAGGTACTTAATAATTAGTTATTTTA
TAACGATAGGAAAAGTATTTAGTGAAAAGCTTTGAGCACAACGAGCACGA
TCTTTACTGATTCCCTAGATGTGATaagaataaaaagataattttcaCTC
TTATGTTTTTATGATCTGCCATggcatttttaaatatttctttagagatc
tttcatttcttttttcttgtaTATATTTGACATCTTTTGCGTTTTTCTTA
TTGTGcaaacaattttacaattttgaatgtagatatttttctattttcct
aTTTGtgtatacagttgacgctctctaattcgacgttctattattcgata
agctcccctTTCCGATGGAAATTTGAAGTCCCTTGAAGATTTTCCGCTCT
CTTATTCCATTTCTAGCGTGTTAAAAGGCCTTTAGGACGGAGTTCAATCT
tagaactttcaaattttggcgttcgaattagaattttgaaattcgattcc
tcaaaacgaaaaaaaaaacagacaaaTATCGAAGATTTCTTCAAAAGAAC
TTAGGTTTTCAGCAAGAACTTCGATATTTGTCCTGATTCAAACCATTTGA
GTCTCTCCTATATTTTTCTCCCCCAGGTCTATAATTCGATATCTACCTCG
TGGTTATCGAATTAGGGAGACTTCCCACTATTCGATACCCTCtcgtattc
gatgaaaatccaatttctcttgaaaaacgaattagagagcgtcaactgca
tTTCTTTACTTGtacacaattttatttttaatattagGCTAAAGATGAAA
TTACC Coding sequence (CDS) from alignment at sc0003455:7098..8852+ >TCONS_00042485 ID=TCONS_00042485|Name=TCONS_00042485|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0003455:7098..8852+ (Clytia hemisphaerica)
ATGCTACAGCTACAACACACAATCAAACTGCTGCTACAGCCACAGCACAC
AATCAGACTGATGTTACAGTCACAACACACAATCAGACTGATGTTACAGT
CACAACACACAATCAGGCTGCTTCAGTCACAACGCACGATCAGACTGCTG
CTACAGCCACAACACACAATCAGACTGCTGCTACAGTCACAACACACAAT
CAGACTGATGTTACAGTCACAACACACAATCAGGCTGCTTCAGTCACAAC
GCACGATCAGACTACTGCTACAATCACAACACACGATCAGACTGCTGACG
ATAAAGTTAAAAAGGAGAACAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042485-exon-sc0003455-1491911889:7098..7592 | TCONS_00042485-exon-sc0003455-1491911889:7098..7592 | Clytia hemisphaerica | exon |
| TCONS_00042485-exon-sc0003455-1510915933:7098..7592 | TCONS_00042485-exon-sc0003455-1510915933:7098..7592 | Clytia hemisphaerica | exon |
| TCONS_00042485-exon-sc0003455-1575043694:7098..7592 | TCONS_00042485-exon-sc0003455-1575043694:7098..7592 | Clytia hemisphaerica | exon |
| TCONS_00042485-exon-sc0003455-1491911889:7697..8852 | TCONS_00042485-exon-sc0003455-1491911889:7697..8852 | Clytia hemisphaerica | exon |
| TCONS_00042485-exon-sc0003455-1510915933:7697..8852 | TCONS_00042485-exon-sc0003455-1510915933:7697..8852 | Clytia hemisphaerica | exon |
| TCONS_00042485-exon-sc0003455-1575043694:7697..8852 | TCONS_00042485-exon-sc0003455-1575043694:7697..8852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003455 | supercontig | sc0003455:7098..8852 + |
Blast
The following BLAST results are available for this feature:
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