TCONS_00042483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042483
Unique NameTCONS_00042483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042483 ID=TCONS_00042483|Name=TCONS_00042483|organism=Clytia hemisphaerica|type=transcript|length=485bp
GTTGATAATCCAGCAGATCATGCATCTAGAGGCTTGAAAGTTAAAGGAGA
TGATAAAAAGCTGTCTGAGTGGTTCAATGGTCCAAGTTTCTCATGGAAAA
ATCCTTTGAGAACTGAAGATTTTTCGTCTGATATTGTATCTGAAAATGAT
CCTGAATTAGTCAGTTCAAAAGCAACAAAGGTTTTGCTcgtaaaaaatga
ttttgttgacATAATATGTtactttgaaaaacatttttcttgttttttga
ggATGAAAAAAGTTATGTCCTTTATTCTTCTGTTCATTGAAAAGTGTCGA
AAAAAGAATCGTAAACCTTATAGAAAAACAAGATCTACACCTGAATTTAA
GTTTGATAGTCTTCTGTCAGTTGACGTTTTATCCAGAGCAACAACATGGA
TTTTTAAACTTcttcaagaaaaatatttttcttctttgtctGATTCTAAA
CTTGTTTCGTTGAATGCCTTTTGTGATAAGGTTGN
Run BLAST on NCBI

protein sequence of TCONS_00042483-protein

>TCONS_00042483-protein ID=TCONS_00042483-protein|Name=TCONS_00042483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
VDNPADHASRGLKVKGDDKKLSEWFNGPSFSWKNPLRTEDFSSDIVSEND
PELVSSKATKVLLVKNDFVDIICYFEKHFSCFLRMKKVMSFILLFIEKCR
KKNRKPYRKTRSTPEFKFDSLLSVDVLSRATTWIFKLLQEKYFSSLSDSK
LVSLNAFCDKV
Run BLAST on NCBI

transcript from alignment at sc0003452:11225..11709

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042483 ID=TCONS_00042483|Name=TCONS_00042483|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0003452:11225..11709 (Clytia hemisphaerica)
NCAACCTTATCACAAAAGGCATTCAACGAAACAAGTTTAGAATCagacaa
agaagaaaaatatttttcttgaagAAGTTTAAAAATCCATGTTGTTGCTC
TGGATAAAACGTCAACTGACAGAAGACTATCAAACTTAAATTCAGGTGTA
GATCTTGTTTTTCTATAAGGTTTACGATTCTTTTTTCGACACTTTTCAAT
GAACAGAAGAATAAAGGACATAACTTTTTTCATcctcaaaaaacaagaaa
aatgtttttcaaagtaACATATTATgtcaacaaaatcattttttacgAGC
AAAACCTTTGTTGCTTTTGAACTGACTAATTCAGGATCATTTTCAGATAC
AATATCAGACGAAAAATCTTCAGTTCTCAAAGGATTTTTCCATGAGAAAC
TTGGACCATTGAACCACTCAGACAGCTTTTTATCATCTCCTTTAACTTTC
AAGCCTCTAGATGCATGATCTGCTGGATTATCAAC

Coding sequence (CDS) from alignment at sc0003452:11225..11709

>TCONS_00042483 ID=TCONS_00042483|Name=TCONS_00042483|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0003452:11225..11709 (Clytia hemisphaerica)
AACCTTATCACAAAAGGCATTCAACGAAACAAGTTTAGAATCagacaaag
aagaaaaatatttttcttgaagAAGTTTAAAAATCCATGTTGTTGCTCTG
GATAAAACGTCAACTGACAGAAGACTATCAAACTTAAATTCAGGTGTAGA
TCTTGTTTTTCTATAAGGTTTACGATTCTTTTTTCGACACTTTTCAATGA
ACAGAAGAATAAAGGACATAACTTTTTTCATcctcaaaaaacaagaaaaa
tgtttttcaaagtaACATATTATgtcaacaaaatcattttttacgAGCAA
AACCTTTGTTGCTTTTGAACTGACTAATTCAGGATCATTTTCAGATACAA
TATCAGACGAAAAATCTTCAGTTCTCAAAGGATTTTTCCATGAGAAACTT
GGACCATTGAACCACTCAGACAGCTTTTTATCATCTCCTTTAACTTTCAA
GCCTCTAGATGCATGATCTGCTGGATTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026314XLOC_026314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042483-exon-sc0003452-1491911889:11225..11709TCONS_00042483-exon-sc0003452-1491911889:11225..11709Clytia hemisphaericaexon
TCONS_00042483-exon-sc0003452-1510915933:11225..11709TCONS_00042483-exon-sc0003452-1510915933:11225..11709Clytia hemisphaericaexon
TCONS_00042483-exon-sc0003452-1575043694:11225..11709TCONS_00042483-exon-sc0003452-1575043694:11225..11709Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042483-proteinTCONS_00042483-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003452supercontigsc0003452:11225..11709 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.42713	5.07088	2.91085	1.13912	0.52004	0	0	0.309432	0	0.536689	0	0	0.170979	0	0.0729907	0.313321	0	0.296717	0.546574	0.428963	0.621411	0.727446	1.03169	1.60793	0.13801	0.123171	0.881287	0.376213	2.14008	1.59896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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