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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042481 ID=TCONS_00042481|Name=TCONS_00042481|organism=Clytia hemisphaerica|type=transcript|length=1244bp
CATGACAGTGAACGCTGGGTTCCCATGTGCAGCTGAGCAGAAAATGACGA
TCTTGAATGGTTGTGCTGCAAGTGTGGACTTCCAAATGTCAAGAACTCAA
TCTTTGACAACTCGTTATCGTCAACATCTTCGAACAGTGACGATGAAGAG
GATGATGTACCACcaaaaaagaaacgaaaatcCCTTCGAGTGGTGACATG
CAATTTTCAAAGTATTTGGAATAAACAATCTGCTCTGAATAATTTCTTGC
TAGACAACAAAATTGATGTTCTTATTGGATGTGAGTCTCATCTTTCATGT
AATATAAAGAACTCTGAATTTCTTCACAAAGACTTTACAGCACATCGGAA
GGATCGTTCTGATGGGTTTGGTGGAGCAATTATTATCTATAGAAAAGAAC
TCATGGCAGAACAAATCAACCACGAGAGTTGTGAAGTTGTTtccctgaaa
attgaaactttccaaAAGCCAATAATAATTACTTCCTACTACAGAACACC
TAGTAGGGAAATTGATATAAAAGGTATTGAAACATTGGCTTCAATTTGTA
AGAAATATAAAGATAATCCTGTATGGATTGGGGGAGATTTTAATCTCCCA
GACATTGATTGGGCATCCAATAGTATAGCTGATCACCAATATCCCAAGAA
ACTAAATGAAGCATACCTTGAATTATTTGATAAAGGTAACCTTGTGCAAC
TTGTTGATTTCACAACAAGGGAAAACGCTACTCTTGATATTCTCCTGACT
AATCGTCCAACATTCCTTGAAAATTGTGAGCAGTTGGCTGGCTTTGGTGA
TCATGACACAGCAATTCTAACTGACATCATCTGTCATCCACAAAAGATCA
AACCTGTCCAAAGAAAGGTATTTGTATGGAAAAGAGCTGACATTGCTTCC
CTCCGCAAAGATATTACTGACAACCTTGCCAAGATTACCTCAATGGAAAC
TGTGGAAACACCCATCAATGAACTCTGGGAAAATTTCAGATTAATCCTTG
ACAATGCTCGAGATAAACATGTCCCATCAAAGTTCACATCTACCAGATAT
AGCCAGCCCTGGTTTAACACCGATTGCAAAAGAgcagttaaaaagaaaaa
gaggcgTTATCGTGTGTACAAGAGGACCAAGCTTGAAAAAGACCGAGAGA
AATATAAATCCGCTGAAAAGGAAGCTAGAACCAAATGCAAAGAGGCATAT
AACAactacatcaaagaaaacattctTGATAGTGATGGTGATTC Run BLAST on NCBI protein sequence of TCONS_00042481-protein >TCONS_00042481-protein ID=TCONS_00042481-protein|Name=TCONS_00042481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MAEQINHESCEVVSLKIETFQKPIIITSYYRTPSREIDIKGIETLASICK
KYKDNPVWIGGDFNLPDIDWASNSIADHQYPKKLNEAYLELFDKGNLVQL
VDFTTRENATLDILLTNRPTFLENCEQLAGFGDHDTAILTDIICHPQKIK
PVQRKVFVWKRADIASLRKDITDNLAKITSMETVETPINELWENFRLILD
NARDKHVPSKFTSTRYSQPWFNTDCKRAVKKKKRRYRVYKRTKLEKDREK
YKSAEKEARTKCKEAYNNYIKENILDSDGD Run BLAST on NCBI transcript from alignment at sc0003450:3554..5017- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042481 ID=TCONS_00042481|Name=TCONS_00042481|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at sc0003450:3554..5017- (Clytia hemisphaerica)
CATGACAGTGAACGCTGGGTTCCCATGTGCAGCTGAGCAGGTATCAATCT
GTTATTTTATCTCCATCTATTCCTTCCTGTTGTTCCTTTCTTCCCTCTAT
CCTGTCCTGATGGCAACCACCAGAAAACTTAAATACCCATGTGGCTCCTG
CAGCAAGGCTGTAAAAAACAACGATATGTCTATTGCATGTGATTCTTGTC
TCCAATGGCACCATTTTCAATGCACAGGAATGAGTCCTCTTATTTTTAAC
ATCTATGTAGAAAATGACGATCTTGAATGGTTGTGCTGCAAGTGTGGACT
TCCAAATGTCAAGAACTCAATCTTTGACAACTCGTTATCGTCAACATCTT
CGAACAGTGACGATGAAGAGGATGATGTACCACCAAAAAAGAAACGAAAA
TCCCTTCGAGTGGTGACATGCAATTTTCAAAGTATTTGGAATAAACAATC
TGCTCTGAATAATTTCTTGCTAGACAACAAAATTGATGTTCTTATTGGAT
GTGAGTCTCATCTTTCATGTAATATAAAGAACTCTGAATTTCTTCACAAA
GACTTTACAGCACATCGGAAGGATCGTTCTGATGGGTTTGGTGGAGCAAT
TATTATCTATAGAAAAGAACTCATGGCAGAACAAATCAACCACGAGAGTT
GTGAAGTTGTTTCCCTGAAAATTGAAACTTTCCAAAAGCCAATAATAATT
ACTTCCTACTACAGAACACCTAGTAGGGAAATTGATATAAAAGGTATTGA
AACATTGGCTTCAATTTGTAAGAAATATAAAGATAATCCTGTATGGATTG
GGGGAGATTTTAATCTCCCAGACATTGATTGGGCATCCAATAGTATAGCT
GATCACCAATATCCCAAGAAACTAAATGAAGCATACCTTGAATTATTTGA
TAAAGGTAACCTTGTGCAACTTGTTGATTTCACAACAAGGGAAAACGCTA
CTCTTGATATTCTCCTGACTAATCGTCCAACATTCCTTGAAAATTGTGAG
CAGTTGGCTGGCTTTGGTGATCATGACACAGCAATTCTAACTGACATCAT
CTGTCATCCACAAAAGATCAAACCTGTCCAAAGAAAGGTATTTGTATGGA
AAAGAGCTGACATTGCTTCCCTCCGCAAAGATATTACTGACAACCTTGCC
AAGATTACCTCAATGGAAACTGTGGAAACACCCATCAATGAACTCTGGGA
AAATTTCAGATTAATCCTTGACAATGCTCGAGATAAACATGTCCCATCAA
AGTTCACATCTACCAGATATAGCCAGCCCTGGTTTAACACCGATTGCAAA
AGAGCAGTTAAAAAGAAAAAGAGGCGTTATCGTGTGTACAAGAGGACCAA
GCTTGAAAAAGACCGAGAGAAATATAAATCCGCTGAAAAGGAAGCTAGAA
CCAAATGCAAAGAGGCATATAACAACTACATCAAAGAAAACATTCTTGAT
AGTGATGGTGATTC Coding sequence (CDS) from alignment at sc0003450:3554..5017- >TCONS_00042481 ID=TCONS_00042481|Name=TCONS_00042481|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0003450:3554..5017- (Clytia hemisphaerica)
ATGGCAGAACAAATCAACCACGAGAGTTGTGAAGTTGTTTCCCTGAAAAT
TGAAACTTTCCAAAAGCCAATAATAATTACTTCCTACTACAGAACACCTA
GTAGGGAAATTGATATAAAAGGTATTGAAACATTGGCTTCAATTTGTAAG
AAATATAAAGATAATCCTGTATGGATTGGGGGAGATTTTAATCTCCCAGA
CATTGATTGGGCATCCAATAGTATAGCTGATCACCAATATCCCAAGAAAC
TAAATGAAGCATACCTTGAATTATTTGATAAAGGTAACCTTGTGCAACTT
GTTGATTTCACAACAAGGGAAAACGCTACTCTTGATATTCTCCTGACTAA
TCGTCCAACATTCCTTGAAAATTGTGAGCAGTTGGCTGGCTTTGGTGATC
ATGACACAGCAATTCTAACTGACATCATCTGTCATCCACAAAAGATCAAA
CCTGTCCAAAGAAAGGTATTTGTATGGAAAAGAGCTGACATTGCTTCCCT
CCGCAAAGATATTACTGACAACCTTGCCAAGATTACCTCAATGGAAACTG
TGGAAACACCCATCAATGAACTCTGGGAAAATTTCAGATTAATCCTTGAC
AATGCTCGAGATAAACATGTCCCATCAAAGTTCACATCTACCAGATATAG
CCAGCCCTGGTTTAACACCGATTGCAAAAGAGCAGTTAAAAAGAAAAAGA
GGCGTTATCGTGTGTACAAGAGGACCAAGCTTGAAAAAGACCGAGAGAAA
TATAAATCCGCTGAAAAGGAAGCTAGAACCAAATGCAAAGAGGCATATAA
CAACTACATCAAAGAAAACATTCTTGATAGTGATGGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042481-exon-sc0003450-1575043694:4978..5017 | TCONS_00042481-exon-sc0003450-1575043694:4978..5017 | Clytia hemisphaerica | exon |
| TCONS_00042481-exon-sc0003450-1575043694:3554..4757 | TCONS_00042481-exon-sc0003450-1575043694:3554..4757 | Clytia hemisphaerica | exon |
| TCONS_00042481-exon-sc0003450-1510915933:4978..5017 | TCONS_00042481-exon-sc0003450-1510915933:4978..5017 | Clytia hemisphaerica | exon |
| TCONS_00042481-exon-sc0003450-1510915933:3554..4757 | TCONS_00042481-exon-sc0003450-1510915933:3554..4757 | Clytia hemisphaerica | exon |
| TCONS_00042481-exon-sc0003450-1491911889:4978..5017 | TCONS_00042481-exon-sc0003450-1491911889:4978..5017 | Clytia hemisphaerica | exon |
| TCONS_00042481-exon-sc0003450-1491911889:3554..4757 | TCONS_00042481-exon-sc0003450-1491911889:3554..4757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003450 | supercontig | sc0003450:3554..5017 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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