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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042480 ID=TCONS_00042480|Name=TCONS_00042480|organism=Clytia hemisphaerica|type=transcript|length=3019bp
gaATAAGTGAATAAggaaataaaaactaaaaagaacGGTAGATGCTGTGA
AATCCGGCAAAGACAGCACAAAACAGGGTTGCGATCAACCTGGCACTCTC
GACTCGAGAAGTGTGAAGTTCCTTGTTGGTGAAGAGGAGACCACTGGTTG
ATGACAAAAATAGTGCACATCCAACCAAACCTACGCATGATCATAGGATT
GATTTCAGCTTTGGACCTAGGACCGGCTGCACATGACAGTGAACGCTGGG
TTCCCATGTGCAGCTGAGCAGGTATCAATCTGTTATTTTATCTCCATCTA
TTCCTTCCTGTTGTTCCTTTCTTCCCTCTATCCTGTCCTGATGGCAACCA
CCAGAAAACTTAAATACCCATGTGGCTCCTGCAGCAAGGCTGTAAAAAAC
AACGATATGTCTATTGCATGTGATTCTTGTCTCCAATGGCACCATTTTCA
ATGCACAGGAATGAGTCCTCTTATTTTTAACATCTATGTAGAAAATGACG
ATCTTGAATGGTTGTGCTGCAAGTGTGGACTTCCAAATGTCAAGAACTCA
ATCTTTGACAACTCGTTATCGTCAACATCTTCGAACAGTGACGATGAAGA
GGATGATGTACCACcaaaaaagaaacgaaaatcCCTTCGAGTGGTGACAT
GCAATTTTCAAAGTATTTGGAATAAACAATCTGCTCTGAATAATTTCTTG
CTAGACAACAAAATTGATGTTCTTATTGGATGTGAGTCTCATCTTTCATG
TAATATAAAGAACTCTGAATTTCTTCACAAAGACTTTACAGCACATCGGA
AGGATCGTTCTGATGGGTTTGGTGGAGCAATTATTATCTATAGAAAAGAA
CTCATGGCAGAACAAATCAACCACGAGAGTTGTGAAGTTGTTtccctgaa
aattgaaactttccaaAAGCCAATAATAATTACTTCCTACTACAGAACAC
CTAGTAGGGAAATTGATATAAAAGGTATTGAAACATTGGCTTCAATTTGT
AAGAAATATAAAGATAATCCTGTATGGATTGGGGGAGATTTTAATCTCCC
AGACATTGATTGGGCATCCAATAGTATAGCTGATCACCAATATCCCAAGA
AACTAAATGAAGCATACCTTGAATTATTTGATAAAGGTAACCTTGTGCAA
CTTGTTGATTTCACAACAAGGGAAAACGCTACTCTTGATATTCTCCTGAC
TAATCGTCCAACATTCCTTGAAAATTGTGAGCAGTTGGCTGGCTTTGGTG
ATCATGACACAGCAATTCTAACTGACATCATCTGTCATCCACAAAAGATC
AAACCTGTCCAAAGAAAGGTATTTGTATGGAAAAGAGCTGACATTGCTTC
CCTCCGCAAAGATATTACTGACAACCTTGCCAAGATTACCTCAATGGAAA
CTGTGGAAACACCCATCAATGAACTCTGGGAAAATTTCAGATTAATCCTT
GACAATGCTCGAGATAAACATGTCCCATCAAAGTTCACATCTACCAGATA
TAGCCAGCCCTGGTTTAACACCGATTGCAAAAGAgcagttaaaaagaaaa
agaggcgTTATCGTGTGTACAAGAGGACCAAGCTTGAAAAAGACCGAGAG
AAATATAAATCCGCTGAAAAGGAAGCTAGAACCAAATGCAAAGAGGCATA
TAACAactacatcaaagaaaacattctTGATAGTGATGGTGATTCAAAAA
AGTTATTTGCCTTTATTAAATCTAAAAAGTCAGATGTCATTGGAGTCAGT
CCCTTATTAGATGAAGGTATTATCCACACTAACGATAAAGATAATGCTGA
AATTCTTAATAAACAGTTTACTAGTGttttttcagttgatgacggaACTA
CCCCAGAAGTTAATGGACCAAAAAGCGCTGCAATCATGCAGATCCACATC
ACCAAAAATGGTCTTCTCAAACTTCTCAACGATCTCAACCCATCCAAAGC
CAGTGGTCCTGACGGTGTTTCGGCAAGAATCTTAAAAGAATGTGCCAATG
AAGTAGCCGACGCTCTCATCTTAATCTTTTCAGCCTCGATGAAACAAGGC
AAAATCCCTGATGAATGGAGGAAAGCAACCATTTCTCCTCTCTACAAAGG
GGGTAACAAAAACAGAGCTAAGGCAGAAAACTACCGTCCAATCAGCCTCA
CTTCAACTACTTGTAAGGTTTTGGAGCACATAGTTCACAGCCATGTAATA
AACCACTTGGAAAGTGAGAAAGTTCTCATTGAATCACAGCATGGCTTTAG
AAAGCGCAGATCCTGTGAGACACAACTTCTGCAAACTGTACATAAACTTG
CTAAAAGTATGAATGATAAAGAACAAGTTGATAGTGTATTGCTTGACTTT
AGTAAGGCTTTTGATAAGGTGGTTCATAGAAAACTCATGATAAAGCTAAG
ACACTACGGTGTCTGTGGAAACATTCATGACTGGATATCAGACTTCCTTT
CTAATCGCACCCAAACCGTCGTCGCCAGAGGAGCTACATCAAGCTGTAAA
GCTGTGACATCAGGTGTTCCACAAGGTACTGTTCTGATGGGCCCACTGCT
TTTTTTAGTATACATCAACGATATGCCCCATGTAACAAGCTCTAAACTTG
CACTTTTTGCAGATGATTCTTATCTGTATCGCCCAATATCAACCAGTGCT
GATGCAGAGGAGCTACAAAAAGACCTATCAAATCTAACAAAATGGGAAAA
CGATTGGCAGATGGAATTCCACCCAGACAAATGTAAGATCCTAACCTTCA
CTAACAAAAGACTCACTGTTGTAGAATCCTACAACATACACAATATCAAC
CTTGAACTGGTAGAGAAGGCTAAATACCTAGGAGTCACTCTAACTAAACG
TCTTACTTGGAACTCTCACATTAATAATGTATGTGCAAAAGCCAACGCTG
TTCGATTCTTCCTGCAAAGAAACCTTGTTAAAAGCAACTCCGAAACTCGC
TTAAAGTGTTACAAAATCTTTATTCGCCCAATCTTAGAATATGCAAGCAC
AGTTTGGGACCCTTCCAAT Run BLAST on NCBI transcript from alignment at sc0003450:2230..5248- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042480 ID=TCONS_00042480|Name=TCONS_00042480|organism=Clytia hemisphaerica|type=transcript|length=3019bp|location=Sequence derived from alignment at sc0003450:2230..5248- (Clytia hemisphaerica)
GAATAAGTGAATAAGGAAATAAAAACTAAAAAGAACGGTAGATGCTGTGA
AATCCGGCAAAGACAGCACAAAACAGGGTTGCGATCAACCTGGCACTCTC
GACTCGAGAAGTGTGAAGTTCCTTGTTGGTGAAGAGGAGACCACTGGTTG
ATGACAAAAATAGTGCACATCCAACCAAACCTACGCATGATCATAGGATT
GATTTCAGCTTTGGACCTAGGACCGGCTGCACATGACAGTGAACGCTGGG
TTCCCATGTGCAGCTGAGCAGGTATCAATCTGTTATTTTATCTCCATCTA
TTCCTTCCTGTTGTTCCTTTCTTCCCTCTATCCTGTCCTGATGGCAACCA
CCAGAAAACTTAAATACCCATGTGGCTCCTGCAGCAAGGCTGTAAAAAAC
AACGATATGTCTATTGCATGTGATTCTTGTCTCCAATGGCACCATTTTCA
ATGCACAGGAATGAGTCCTCTTATTTTTAACATCTATGTAGAAAATGACG
ATCTTGAATGGTTGTGCTGCAAGTGTGGACTTCCAAATGTCAAGAACTCA
ATCTTTGACAACTCGTTATCGTCAACATCTTCGAACAGTGACGATGAAGA
GGATGATGTACCACCAAAAAAGAAACGAAAATCCCTTCGAGTGGTGACAT
GCAATTTTCAAAGTATTTGGAATAAACAATCTGCTCTGAATAATTTCTTG
CTAGACAACAAAATTGATGTTCTTATTGGATGTGAGTCTCATCTTTCATG
TAATATAAAGAACTCTGAATTTCTTCACAAAGACTTTACAGCACATCGGA
AGGATCGTTCTGATGGGTTTGGTGGAGCAATTATTATCTATAGAAAAGAA
CTCATGGCAGAACAAATCAACCACGAGAGTTGTGAAGTTGTTTCCCTGAA
AATTGAAACTTTCCAAAAGCCAATAATAATTACTTCCTACTACAGAACAC
CTAGTAGGGAAATTGATATAAAAGGTATTGAAACATTGGCTTCAATTTGT
AAGAAATATAAAGATAATCCTGTATGGATTGGGGGAGATTTTAATCTCCC
AGACATTGATTGGGCATCCAATAGTATAGCTGATCACCAATATCCCAAGA
AACTAAATGAAGCATACCTTGAATTATTTGATAAAGGTAACCTTGTGCAA
CTTGTTGATTTCACAACAAGGGAAAACGCTACTCTTGATATTCTCCTGAC
TAATCGTCCAACATTCCTTGAAAATTGTGAGCAGTTGGCTGGCTTTGGTG
ATCATGACACAGCAATTCTAACTGACATCATCTGTCATCCACAAAAGATC
AAACCTGTCCAAAGAAAGGTATTTGTATGGAAAAGAGCTGACATTGCTTC
CCTCCGCAAAGATATTACTGACAACCTTGCCAAGATTACCTCAATGGAAA
CTGTGGAAACACCCATCAATGAACTCTGGGAAAATTTCAGATTAATCCTT
GACAATGCTCGAGATAAACATGTCCCATCAAAGTTCACATCTACCAGATA
TAGCCAGCCCTGGTTTAACACCGATTGCAAAAGAGCAGTTAAAAAGAAAA
AGAGGCGTTATCGTGTGTACAAGAGGACCAAGCTTGAAAAAGACCGAGAG
AAATATAAATCCGCTGAAAAGGAAGCTAGAACCAAATGCAAAGAGGCATA
TAACAACTACATCAAAGAAAACATTCTTGATAGTGATGGTGATTCAAAAA
AGTTATTTGCCTTTATTAAATCTAAAAAGTCAGATGTCATTGGAGTCAGT
CCCTTATTAGATGAAGGTATTATCCACACTAACGATAAAGATAATGCTGA
AATTCTTAATAAACAGTTTACTAGTGTTTTTTCAGTTGATGACGGAACTA
CCCCAGAAGTTAATGGACCAAAAAGCGCTGCAATCATGCAGATCCACATC
ACCAAAAATGGTCTTCTCAAACTTCTCAACGATCTCAACCCATCCAAAGC
CAGTGGTCCTGACGGTGTTTCGGCAAGAATCTTAAAAGAATGTGCCAATG
AAGTAGCCGACGCTCTCATCTTAATCTTTTCAGCCTCGATGAAACAAGGC
AAAATCCCTGATGAATGGAGGAAAGCAACCATTTCTCCTCTCTACAAAGG
GGGTAACAAAAACAGAGCTAAGGCAGAAAACTACCGTCCAATCAGCCTCA
CTTCAACTACTTGTAAGGTTTTGGAGCACATAGTTCACAGCCATGTAATA
AACCACTTGGAAAGTGAGAAAGTTCTCATTGAATCACAGCATGGCTTTAG
AAAGCGCAGATCCTGTGAGACACAACTTCTGCAAACTGTACATAAACTTG
CTAAAAGTATGAATGATAAAGAACAAGTTGATAGTGTATTGCTTGACTTT
AGTAAGGCTTTTGATAAGGTGGTTCATAGAAAACTCATGATAAAGCTAAG
ACACTACGGTGTCTGTGGAAACATTCATGACTGGATATCAGACTTCCTTT
CTAATCGCACCCAAACCGTCGTCGCCAGAGGAGCTACATCAAGCTGTAAA
GCTGTGACATCAGGTGTTCCACAAGGTACTGTTCTGATGGGCCCACTGCT
TTTTTTAGTATACATCAACGATATGCCCCATGTAACAAGCTCTAAACTTG
CACTTTTTGCAGATGATTCTTATCTGTATCGCCCAATATCAACCAGTGCT
GATGCAGAGGAGCTACAAAAAGACCTATCAAATCTAACAAAATGGGAAAA
CGATTGGCAGATGGAATTCCACCCAGACAAATGTAAGATCCTAACCTTCA
CTAACAAAAGACTCACTGTTGTAGAATCCTACAACATACACAATATCAAC
CTTGAACTGGTAGAGAAGGCTAAATACCTAGGAGTCACTCTAACTAAACG
TCTTACTTGGAACTCTCACATTAATAATGTATGTGCAAAAGCCAACGCTG
TTCGATTCTTCCTGCAAAGAAACCTTGTTAAAAGCAACTCCGAAACTCGC
TTAAAGTGTTACAAAATCTTTATTCGCCCAATCTTAGAATATGCAAGCAC
AGTTTGGGACCCTTCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042480-exon-sc0003450-1575043694:2230..5248 | TCONS_00042480-exon-sc0003450-1575043694:2230..5248 | Clytia hemisphaerica | exon |
| TCONS_00042480-exon-sc0003450-1510915933:2230..5248 | TCONS_00042480-exon-sc0003450-1510915933:2230..5248 | Clytia hemisphaerica | exon |
| TCONS_00042480-exon-sc0003450-1491911889:2230..5248 | TCONS_00042480-exon-sc0003450-1491911889:2230..5248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003450 | supercontig | sc0003450:2230..5248 - |
Blast
BLAST of TCONS_00042480 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.247e-18 Identity = 85/325 (26.15%), Postives = 143/325 (44.00%), Query Frame = 2
Query: 1949 ASGPDGVSARILKECANEVADALILIFSASMKQGKIPDEWRKATISPLYKGGNKNRAKAENYRPISLTSTTCKVLEHIVHSHVINHLESEKVLIESQHGFRKRRSCETQLLQTVHKLAKSMNDKEQVDS--------VLLDFSKAFDKVVHRKLMIKLRHYGVCGNIHDWISDFLSNRTQTVVARGATSSCKAVTSGVPQGTVLMGPLLFLVYINDMPHVTSS--------------KLALFADDS--YLYRPISTSADAEELQKDLSNLTKWENDWQMEFHPDKCKILTFTNKRLTVVESYNIHNINLELVEK-AKYLGVTLTK 2848
+ GPDG +A + E+ L+ +F + K+G +P+ + +A+I + K G ++ K EN+RPISL + K+L I+ + + H+ +K++ Q GF +Q + KS+N + ++ + +D KAFDK+ ++ L G+ G I T ++ G + +G QG L PLLF + + + KL+LFADD YL PI A+ L K +SN +K + + K + + N R T ES + + + K KYLG+ LT+
Sbjct: 470 SPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPG-RDTTKKENFRPISLMNIDAKILNKILANRIQQHI--KKLIHHDQVGF-------IPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPL-SPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPI---VSAQNLLKLISNFSKVSG---YKINVQKSQAFLYNNNRQT--ESQIMGELPFTIASKRIKYLGIQLTR 775
The following BLAST results are available for this feature:
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