TCONS_00042477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042477
Unique NameTCONS_00042477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042477 ID=TCONS_00042477|Name=TCONS_00042477|organism=Clytia hemisphaerica|type=transcript|length=382bp
GTGGAATGTTGTTCTATAGACAGACCCAAATGCACCACttccaatttttt
ctttcacagtTATACTGGATTTgttgaatttgattatttttcctGTTATG
AGTTGCTTTAGACTGGTAAAAACGTGTCGATTTTTATTGTTAATGACAGT
CCTAGATGATCGactcataaaaaaagaacggTTTATTTGTTTGGCCTTAA
AAGCTCGGTTTTCTTTTGTTGCTTCTTCTAGTCTGTGATATAAATTCTGT
TGTTCTTCTTCCTTCTGTGCCGCGTCCCTTATCTTGTTTCGTTTCCTTCT
CGTGCTGGtccgtttgtttttttttgtttggcttCAATGGACATTTCTCG
AGTCCCTTTCCTaagattttacaaaattttaa
Run BLAST on NCBI

transcript from alignment at sc0003446:3919..4300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042477 ID=TCONS_00042477|Name=TCONS_00042477|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0003446:3919..4300 (Clytia hemisphaerica)
ttaaaattttgtaaaatcttAGGAAAGGGACTCGAGAAATGTCCATTGaa
gccaaacaaaaaaaaacaaacggaCCAGCACGAGAAGGAAACGAAACAAG
ATAAGGGACGCGGCACAGAAGGAAGAAGAACAACAGAATTTATATCACAG
ACTAGAAGAAGCAACAAAAGAAAACCGAGCTTTTAAGGCCAAACAAATAA
AccgttctttttttatgagtCGATCATCTAGGACTGTCATTAACAATAAA
AATCGACACGTTTTTACCAGTCTAAAGCAACTCATAACaggaaaaataat
caaattcaacAAATCCAGTATAactgtgaaagaaaaaattggaaGTGGTG
CATTTGGGTCTGTCTATAGAACAACATTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026309XLOC_026309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042477-exon-sc0003446-1491911889:3919..4300TCONS_00042477-exon-sc0003446-1491911889:3919..4300Clytia hemisphaericaexon
TCONS_00042477-exon-sc0003446-1510915933:3919..4300TCONS_00042477-exon-sc0003446-1510915933:3919..4300Clytia hemisphaericaexon
TCONS_00042477-exon-sc0003446-1575043694:3919..4300TCONS_00042477-exon-sc0003446-1575043694:3919..4300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003446supercontigsc0003446:3919..4300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.199979	0.232195	0	1.65932	1.74829	0.527309	0.24683	0.518435	0	1.2466	0.409734	0.136388	0.991482	0	0.124966	0	0	0	0	0.198277	0	0	0	0.440357	0.196504	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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