TCONS_00042473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042473
Unique NameTCONS_00042473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042473 ID=TCONS_00042473|Name=TCONS_00042473|organism=Clytia hemisphaerica|type=transcript|length=989bp
TAGGCAGAGAAATGGAATGGAAAGAGAATGACTTGCCATTCGCGGATATC
CCGTTGTTATTAGGTGATGGGTTTGaagaaaaagttgagaacaCCTTTGC
AGATGTACAGTTGGCAAGGACCTTTTCTTTTGCCAGAAAGGATGATAATA
GACGAAACACCGGTACAAAGAAAACACGGGGCCCTGGTGTATCAAGAGCT
TCCATAAAGTTTTATCATCTCCCTGAAGCGTCGGAGaggccaaaattcaa
aaatctcgaTTGTGCAGTAGTAAAAAGGCACATGTCAAAAGGCTACGGTT
ATCCGAAGATCTGTATTGACGACAAAGGAAAGATAAAGGCGGCGTCAATA
CAGATCAATCAAACTGAAGAGGAGCTTAATGAATTTTTCGTACAAAACTT
TCCAAATTTGAGGCGGTCAccgatatatttttttaaaatcggCAACCATG
GAAAATATGTGCCCCTCCAGATCAAAACCCCTCAAGACTTGAGAAATTTA
GCAAAAGACGGGAAACGCTACCAAGGCATTGTTATTGTTACGAATCACGA
CCTTAGTCAAGattcatCTGAATTGATAAAAGATACATTCATACCGATAC
CAAGACCCCGTCCCCCACAGAAACGTCCCGAAATGAACAGCGGTCCATTT
CTCCCACGTTATGGTGGAGTAATACACAATTTCACGCTGATAAACACGTG
CCCTCTTGATACATGGTTCAGTATTTTGATATATATTAACTCGACACACC
CAGGATTCATCGACGATATACCAAAGTCAAAAGAATTCCAACGACTTTGG
TCGTATATTACTGTTGGTGAATTTACTGGCGCAAAGCTCAACGTCGCCAA
AGACATGAATTTACAAGCAAACCTACGAAAGACAATATCCTTCTTTTTTA
GTGAGGTGGAAATCGTTTACCGACCCTATCTGTGCGATTACATGTCGTGT
AACATGGTATCCACCTGTACTAACACATCATGCAGAATG
Run BLAST on NCBI

transcript from alignment at sc0003445:6542..11757+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042473 ID=TCONS_00042473|Name=TCONS_00042473|organism=Clytia hemisphaerica|type=transcript|length=5216bp|location=Sequence derived from alignment at sc0003445:6542..11757+ (Clytia hemisphaerica)
TAGGGTATGTCATCTTCTTTACCAATCTGCTTCGATTCAAGAAAGTTGGA
AACAAGAAGATACCTAAGAGCACTATATATATGAATGCCGTCAATATGAT
TTTAAAGGAgggataaaatttatttttagccTTATTGTGGCTAATTTGAC
TAATTGGATCCTTTAAtaagtaaaaagttgaaatcttCCTATTTTCCCAA
TCCTTGCAGAGACTTTCAGATACCAAAAtggcacccttaagggcggttCA
TACCCATACACTTGCCTAGCTATCTCCCGGGCTTTAAAAAGGGATTCAAG
CATCACTGGTGGGCCTGGTGTGTTATGTTGTGgcttttaaagatttaaat
tgTTAATAGTATTTAATATTTATTCTGAATATTTTACTTGCAAATAAAAA
TCATACAACGCTTTTTTAAAtgagaatagtgtactttggatgagggtcaa
gtattcttaagaaattgctaaaattgagggtgaaatattcttaacttatt
cttacgtttttagacttgacttctttacaaacatgagaaataatcaatct
gagagttttggacttttgagtgaacatttgggttaaaattaaaTTGCTTC
CTCAAGGTTCAATTTATTTCTAACCAGANAAATAATCAAtctgagagttt
tggacttttgagtgaacatttgggttaaaattaaaTTGCTTCCTCAAGGT
TCAATTTATTTCTAACCAGactccgtataaaaaaccctggtctggaagct
tattgttttaactttttgttagctttttcctttgttaatatcaaaagata
gaAATCGACTTGCTCAGtatttgatcacgttaccaaatactcctcttggg
attggtttaagatttaatcacgtgatcaaaaaatgagcaaaacaaactaa
tttctcaacacaagttcaagtaagtaacaatggaaagaaacaaaaggctt
ccagaccagggttttttatacggactatgctctaacaaaggaagcagttt
ttctcatcctagagggtattcttacgatttggccaattttcaccctgata
ctctcatagaagatattcttataaaaaaagcgtgtatttattTTTCAGCA
GAGAAATGGAATGGAAAGAGAATGACTTGCCATTCGCGGATATCCCGTTG
TTATTAGGTGATGGGTTTGaagaaaaagttgagaacaCCTTTGCAGATGT
ACAGTTGGCAAGGACCTTTTCTTTTGCCAGAAAGGATGGTAAGTAACGCT
CTGCTGTGGGCCACGGGCTGTACATTATTAACGTTTCTTAAACGATACAA
TTATGGATATTCCGAGCTTTAAGTTCAAGGCAAAAAGTATTAAGATTACG
TAAGGCATAATCgagaaaaagagaaagacgAGTATAACTTATAATTAACA
AAGGAGCTCTACACAATTCCGAAGAATCAACCTTTGAAAGTACTTACGCT
AAAAGTACTCTCACTAATCTGAACTCGAAGATGGAGTcaaacttgtttga
gttaaaTGAAATTGGGTAATTAAATTTCTATTATAGATAATAGACGAAAC
ACCGGTACAAAGAAAACACGGGGCCCTGGTGTATCAAGAGCTTCCATAAA
GTTTTATCATCTCCCTGAAGCGTCGGAGaggccaaaattcaaaaatctcg
aTTGTGCAGTAGTAAAAAGGCACATGTCAAAAGGCTACGGTATtcaatct
tattacttttagaTACAATagtgtcaaaaaaaaacaagaatctTGGTCAA
ACGTTAAAAAATCTTTCTATTGATTTACCCAAACCAATTTGACAATCTtt
ttacttttgccagaaagcaAAATATAGATTTAGCTCCCAAAGCTATACAG
GTCTGCATTTTTGacgatttctaaaaaattattttcaacaacACTCTTAA
TCCTTCAAGCATCTCGTCAAGCACTTAAaacgaaaaacttttttaataac
ttttgaaatatttatccaattgACAAGTTTGTCAGTATGCACCAAATATG
GATTGACATAATTGGTAAAAATCTCtgtattaccttatcggccaaaatta
GTCGGCCTCAATTTTAGTCGCCccaaaattttagtcggccctaattttag
ttaccgagccaaaatttagtcacttagagCCGagtaagttttggccgata
aggtataaaaAACTTCATCGtcacttgatgacgtcatctattttactaaa
ttttgtgatataccttatcggggggaAGAAACTCGGGGATAAGTGACTAA
TTATCTAATTAACTAATTAAGTAactaattaaaattaaaattttccccga
cTCAAAAAAATACCGGCTTTTTTTTCCTCGATAAGGTAGTGTTCTCGTCT
CCTGATTCACCCTTGCGTTTCTGTAGCTTATACATAGATGATGTTCTTTA
CCTGTTATAAATTGCTTTAATCTCAGGTTATCCGAAGATCTGTATTGACG
ACAAAGGAAAGATAAAGGCGGCGTCAATACAGATCAATCAAACTGAAGAG
GAGCTTAATGAATTTTTCGTACAAAACTTTCCAAATTTGAGGCGGTCAcc
gatatatttttttaaaatcggCAACCATGGAAAATATGTGCCCCTCCAGA
TCAAAACCCCTCAAGACTTGAGAAATTTAGCAAAAGACGGGAAACGCTAC
CAAGGCATTGTTATTGTTACGAATCACGACCTTAGTCAAGGTTAGTTTAA
TGACAATCTTATTTTTTCCCTTTCCTTGTAGCAACTAATGATTCTTACat
ctcgttgaaaagataattcagagcactataatttccgagaaaaattatta
aaaaaaaatgaaaatgaagatgaaaaatgaagaaaaaaaaaagaaatttt
tatcctttgGTGCTagaaacttaatttttggtGCATAAGTACTTATGAAG
CCTCCTGATAATCctggttttaaaattttcgcgagcATTAAATAATTCGT
TAATCTTCGAAATACTGGCAGGGGTAATATAATTCTCGCGTAAATTAAGT
AgccaacaaaactatgacatGNagaaaaattttttaaacgacttgaaact
ttttgacttttaagaaaatcttattaagcgtacttgtgcaaaattttaag
ttcatagatggtccagatcaggttttatgactttattgtgaaacatgact
tAAAACCCAGCTAACATCgcttttaaaactcaaaatcttaaagtgctgat
aacttctgaactatttattcaatcattgtcAAACATTGACAATataagtt
taaaaaattaaaaatcaaaaaaatcaaaatgatgacgtcatcatttatga
cgtcatcaaattttgaaagttttactcATCTTCATCACATATTTTAAGAA
AGAATCTTcatgaaaaatgcaaaaccggcaattatgttaaagggCAACCT
TTTATCTTCAGAATCTTTAAtcagaatctaaatatctttattggttcgac
tatAATAGACATCTTCCTGGAAATTTATGTCATAACTTTCCTAGATCAAT
AATAaccgagggtggtagattctacccctccctggggatacaaaaatcaa
aaaaacttggggctaatagggttaagaaaatttttccgcaAACTTTCAAA
CAGTTCAATCCCtggttcaattctttgcggaaaatctgaaaaaatcgaaa
caaaaaggcTAATTACTCATTAAAACTTAGAAtcttttgtaaaagagggt
attatgacgttttattaacgtctttttaaagttcataacgtcatttttgt
aattaaattcttaattactcttcaCATAGTAAATTAGCAAACAATTTGCG
AAGGTAGTTTTATGTTAAAAATGTCAAGGAACctgaaacaaaagttttat
cttcaaatcagGCATAACcgattttctgactatggtcagagcccttaatc
cTCTTACAGTAAGGTACAACTATTTTTCGCGCAAAGTTCATGAAATTTCT
AGCACCAAAGGATTTTTTGAATTACTTTTCTCGGAAATTAAAgtatattt
caaattagctgtcagtaaaatttgaaatgctcataacttttgatatactT
TCAGCTAGATAGCAAATATATGCGCATTGAAAAGATACTTGTGAGCACGG
AATTCCGTGTTATAAAGGTGTTTCTcgttataaagaaaaacagcgtgtaa
ggaatttaaaaaaatcaaacattgcAGTGATCCGCAAGCTAGTATTTCAA
ATAACGCCCAAGATGGGATACTCGTGGTACCTGATAAAATTTTCTACTTA
ATggtgtaaaaaaataaatttcagtgTGTAAATTTCACCCTCTCAAACAA
ATATACCTATTTTCAATTTAGGCGTTNACTCGTGGTACCTGATAAAATTT
TCTACTTAATggtgtaaaaaaataaatttcagtgTGTGTCTATTACACCC
TCTCAAACAAATATACCTATTTTCAATTTAGGCGTTCTTTCAGATAGTCA
AATGAaagaacagaaagaaagaaaacaagtAAAGATAGAGACACAAGATA
CAAGTAATGAAACAAGCTTATTTCTCGAGTGTTTTCTTTAACTTGCACGT
CGACAAGGACTTGCCGGGAGTTCGAAAACGAATCttgtcaaatctttgtt
ttaaaaagaatagCACCCAACTTGCAaagtttttaataattttatcaaaa
agaagaaaaagtcgAACGTGTGTGCATTTTTCCAACTATTTGGGGGGGAG
GTCTCCAATCGAGTTCATAGTCTTACCagtcctcaaaaatcaaaattttg
cttttcatttcaaataatttcaaatttactttttttagattcatCTGAAT
TGATAAAAGATACATTCATACCGATACCAAGACCCCGTCCCCCACAGAAA
CGTCCCGAAATGAACAGCGGTCCATTTCTCCCACGTTATGGTGGAGTAAT
ACACAATTTCACGCTGATAAACACGTGCCCTCTTGATACATGGTTCAGTA
TTTTGATATATATTAACTCGACACACCCAGGATTCATCGACGATATACCA
AAGTCAAAAGAATTCCAACGACTTTGGTCGTATATTACTGTTGGTGAATT
TACTGGCGCAAAGCTCAACGTCGCCAAAGACATGAATTTACAAGCAAACC
TACGAAAGACAATATCCTTCTTTTTTAGTGAGGTGGAAATCGTTTACCGA
CCCTATCTGTGCGATTACATGTCGTGTAACATGGTATCCACCTGTACTAA
CACATCATGCAGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026305XLOC_026305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042473-exon-sc0003445-1491911889:6542..6545TCONS_00042473-exon-sc0003445-1491911889:6542..6545Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1510915933:6542..6545TCONS_00042473-exon-sc0003445-1510915933:6542..6545Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1575043694:6542..6545TCONS_00042473-exon-sc0003445-1575043694:6542..6545Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1491911889:7640..7779TCONS_00042473-exon-sc0003445-1491911889:7640..7779Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1510915933:7640..7779TCONS_00042473-exon-sc0003445-1510915933:7640..7779Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1575043694:7640..7779TCONS_00042473-exon-sc0003445-1575043694:7640..7779Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1491911889:8078..8230TCONS_00042473-exon-sc0003445-1491911889:8078..8230Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1510915933:8078..8230TCONS_00042473-exon-sc0003445-1510915933:8078..8230Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1575043694:8078..8230TCONS_00042473-exon-sc0003445-1575043694:8078..8230Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1491911889:8968..9231TCONS_00042473-exon-sc0003445-1491911889:8968..9231Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1510915933:8968..9231TCONS_00042473-exon-sc0003445-1510915933:8968..9231Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1575043694:8968..9231TCONS_00042473-exon-sc0003445-1575043694:8968..9231Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1491911889:11330..11757TCONS_00042473-exon-sc0003445-1491911889:11330..11757Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1510915933:11330..11757TCONS_00042473-exon-sc0003445-1510915933:11330..11757Clytia hemisphaericaexon
TCONS_00042473-exon-sc0003445-1575043694:11330..11757TCONS_00042473-exon-sc0003445-1575043694:11330..11757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003445supercontigsc0003445:6542..11757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.304278	0.684666	0.0463303	0.427615	0	0.297185	0	0.321517	0.00839458	0.375462	0.529267	2.44394e-05	0.806253	0.667248	0	0.520333	0.30657	0.364426	0.0770429	0.60228	0.671308	0.488312	0.367801	0.303696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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