TCONS_00042467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042467
Unique NameTCONS_00042467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042467 ID=TCONS_00042467|Name=TCONS_00042467|organism=Clytia hemisphaerica|type=transcript|length=918bp
ATATCGCCATATACCAAGGAATAAAATATTAACACAGACAGGCTCAAAAA
CCTAgggttttaaagaaaatatttttgctgcATTTTGTATTCTGAACATC
CTGGTTTCTTCCACCGCTGATCAAGTTTTGAGTGTTCTCGTTCGACTTTT
GGTTTTTAAGCTTTTCATTCCATTTTGTAAACAATAAAGACACAAGGGGC
CACATGAATTCAAGACTTCTTAAGATATACACGTCAAAGCAATAAAACAA
GGCCCTCTTTTCTCAAAACGTTCGTCTCTGTAGTTTACGTTGTTTTTCAG
GCATTTTAATTGGGTTTAATTAGCTAGCGGTTGgccttttcaatttttag
aaaaatattttctataatgtgcgtttcgaatgttttgatttagaaacgtt
ctttttttaaaaaacattcgaatacgaaattcattttgttttgaacattC
GAATCGCCAAAATGccgaattttttgttttgattctttttattgaaactt
ttttgtgagCCAAGCATAATGTGGTGCTCTTCAGTTTATAAAATGTTGGA
ATaagattattatttttgccattttcatttttaaggaggTTATGCTGAAA
AGATGGAGCAAAGACTTTTGATTGATCATTTTCTCAGGTTCGTACCCATG
CTACTGGCCCTctggaaaatgcaaaaataactgATTGTTCAAAGCAAGAT
TCGGTCAACACTATTGCGTAAATCTAACTCGTCAGTCCAGCTGAACCAAA
ATATCATCAACATGTTACAGGTTGTGCATTAAGAAGAAAGGACTTTCAAA
CGTGTGTTTGCAGATCGATTTCATCAATGTCTGACTGAGCCGACTTCAAG
GAAAAGAAGGAAGCCAAatttaaacacaaagaaaagcaTGTCAAACTTTA
ATGGTACCAAGTATTTGA
Run BLAST on NCBI

transcript from alignment at sc0003443:504..2854+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042467 ID=TCONS_00042467|Name=TCONS_00042467|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at sc0003443:504..2854+ (Clytia hemisphaerica)
ATATCGCCATATACCAAGGAATAAAATATTAACACAGACAGGCTCAAAAA
CCTAgggttttaaagaaaatatttttgctgcATTTTGTATTCTGAACATC
CTGGTTTCTTCCACCGCTGATCAAGTTTTGAGTGTTCTCGTTCGACTTTT
GGTTTTTAAGCTTTTCATTCCATTTTGTAAACAATAAAGACACAAGGGGC
CACATGAATTCAAGACTTCTTAAGATATACACGTCAAAGCAATAAAACAA
GGCCCTCTTTTCTCAAAACGTTCGTCTCTGTAGTTTACGTTGTTTTTCAG
GCATTTTAATTGGGTTTAATTAGCTAGCGGTTGgccttttcaatttttag
aaaaatattttctataatgtgcgtttcgaatgttttgatttagaaacgtt
ctttttttaaaaaacattcgaatacgaaattcattttgttttgaacattC
GAATCACCAAAATTccgaattttttgttttgattctttttattgaaactt
ttttgcgANcattttgttttgaacattCGAATCGCCAAAATGccgaattt
tttgttttgattctttttattgaaacttttttgtgagCCAAGCATAATGT
GGTGCTCTTCAGTTTATAAAATGTTGGAATaagattattatttttgccat
tttcatttttaaggaggTTATGCTGAAAAGATGGAGCAAAGACTTTTGAT
TGATCATTTTCTCAGGTGAGTGACATTTCTAAGACGATCCTTTCTCTAAT
AATTGgctagaaaattctgaaaattaacTCACATCATAATGATTTtctaa
agtttaattttttttgataagttCTTTGGGAAGCAAgtacaaatttcttt
ttttctgaaagaacaGAGTCGAGACACAAAagtattttgttcaaaaagag
ACCGGTGAATTGCAATAACTAACTGTGACTTTTGATTAGTTGACAACAAC
TCACTTCAGTGGCGGAAGACAAAATCAGAGAAAGATTTTCGATCAAAAGG
CGTTATTATTTAATCAAAATAAAGGTCTTATTGTCGTGAAACATTAGTTT
CATTCGTATCAGAATACCCTGATTGACTGTTACTTTACCTTTTAGGTTCG
TACCCATGCTACTGGCCCTctggaaaatgcaaaaataactgATTGTTCAA
AGCAAGGTATGCTATTCGTTGGTGTGTTTTAGGTACCACATTTCAACTTT
ATTATTGACGAATAATTCACCCCTCTTTCAGTGTTCCGGTGAGAAATTCT
TAACCACTTAGGAATGAAATGAAGGAGGTAATCGAGATAACATCGGATTA
AAGTTTTTGGTTTCTTGACCCTCAACCCTCAACCCTGCTTTCTGTTTTTA
TCTTAGGACAAGATTGAGATATTTTAGGCTCTTTATCCAATTTCACTCTT
GAATTTCTTGCAATTCAATTTCGGCTTAGCATTCTTCTTAAATTGTTGTA
GCTTCATTACTATCTAGGGTATATTAAAGAAGAGCTtgtatttataaagt
ttttgagGGTTTACCTACTCTTTcccaaaatcaaaacttttctttcctCG
TTTTTTTTCTCCAGATTCGGTCAACACTATTGCGTAAATCTAACTCGTCA
GTCCAGCTGAACCAAAATATCATCAACATGTTACAGGTAAACCTCATAGA
TACTCGCATGATAAAAATGCTTAGATTTATCCATCGGATTGGGATCAGCG
TTTCTAAATACCCTCTTTATTAAGTACCGAGATTTTGGTAAAACCTTTCA
AGGGAGGCACCAGTTCCctcaaatttatatcaataaaGGTGAAGTGGAGC
TCACATCATGATCTCAAAAAGCTTGCTTTGTAGAATACATTTTCTCAGcg
agtggggataaaaataatggactaaaactcgatgggaattaatattccca
tattttttatggctacggatttcaattcttttgtttttaagtcagaaaaa
acaagaaataaaattcagtggggatgagaaaactagcataaaattttgca
gtgaggatcggTTTTTTGATTATCTTCAATGGGGACAATAGTCTTACTAA
AAACTGTGACAAGTTAACACCCTTTGTCCCATAGGTTAATAAGTTATTTT
GGCACACTGCTATCCGGATGGTTACAGTCAATAATTATCacatttctttg
attttgtcaTACTATTTGTAATTATTTTCATAAATCATTATTTCCCTTTC
AAGGTTGTGCATTAAGAAGAAAGGACTTTCAAACGTGTGTTTGCAGATCG
ATTTCATCAATGTCTGACTGAGCCGACTTCAAGGAAAAGAAGGAAGCCAA
atttaaacacaaagaaaagcaTGTCAAACTTTAATGGTACCAAGTATTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026300XLOC_026300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042467-exon-sc0003443-1491911889:504..935TCONS_00042467-exon-sc0003443-1491911889:504..935Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1510915933:504..935TCONS_00042467-exon-sc0003443-1510915933:504..935Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1575043694:504..935TCONS_00042467-exon-sc0003443-1575043694:504..935Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1491911889:1014..1218TCONS_00042467-exon-sc0003443-1491911889:1014..1218Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1510915933:1014..1218TCONS_00042467-exon-sc0003443-1510915933:1014..1218Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1575043694:1014..1218TCONS_00042467-exon-sc0003443-1575043694:1014..1218Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1491911889:1599..1659TCONS_00042467-exon-sc0003443-1491911889:1599..1659Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1510915933:1599..1659TCONS_00042467-exon-sc0003443-1510915933:1599..1659Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1575043694:1599..1659TCONS_00042467-exon-sc0003443-1575043694:1599..1659Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1491911889:2068..2139TCONS_00042467-exon-sc0003443-1491911889:2068..2139Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1510915933:2068..2139TCONS_00042467-exon-sc0003443-1510915933:2068..2139Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1575043694:2068..2139TCONS_00042467-exon-sc0003443-1575043694:2068..2139Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1491911889:2707..2854TCONS_00042467-exon-sc0003443-1491911889:2707..2854Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1510915933:2707..2854TCONS_00042467-exon-sc0003443-1510915933:2707..2854Clytia hemisphaericaexon
TCONS_00042467-exon-sc0003443-1575043694:2707..2854TCONS_00042467-exon-sc0003443-1575043694:2707..2854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003443supercontigsc0003443:504..2854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.829496	0.808999	0.98324	0.711283	0.506762	0.148893	0.140545	0.81006	1.18337	0.743221	1.00272	0.533691	0.0765392	0.163751	0.343915	0.309163	2.08346	1.46047	0.287401	0.314438	7.10263	4.60061	0.633233	0.503349	0.885834	0.44648	0.367653	0.216671	0.179635	0.166654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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