TCONS_00042466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042466
Unique NameTCONS_00042466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042466 ID=TCONS_00042466|Name=TCONS_00042466|organism=Clytia hemisphaerica|type=transcript|length=789bp
TAAGACCGGTGATTGGAAGTCTGGTAACGAGTGTATACAAACATGACTGT
AGCCGGGGGTGCAATATTTCATGACATTGATTTTGTAAATGTAAATAATG
GAGCATTTAGCAAGAATTTCACAATATATGAAGTTAATTTTTATATCTTT
CCAATTCAGGCATAAAAAAAATGTTCATATTACTTTTACTAATTGTCAGT
TAATAAATAGTTAGTTGAAATAACCCCCCGACtacttcttgaaaataaaa
atgaaatacggCGATCTGATTGGCCCGTCATAAAAGTTCTCCATAAAATT
TTTTGAGGCGACAGAgtatttttcaaagcaaaacttCGTGAAGAAAAGAT
GGTCATGGAAATCCTTTTGTCAATATTTCTGGCGATTTGACATCTTCTTT
TTATGGTTCAGAAGATTGCTTGAAGTGGAGGATGCAAGTAACAAGATTAT
AGAAGGgaggTTATGCTGAAAAGATGGAGCAAAGACTTTTGATTGATCAT
TTTCTCAGGTTCGTACCCATGCTACTGGCCCTctggaaaatgcaaaaata
actgATTGTTCAAAGCAAGATTCGGTCAACACTATTGCGTAAATCTAACT
CGTCAGTCCAGCTGAACCAAAATATCATCAACATGTTACAGGTTGTGCAT
TAAGAAGAAAGGACTTTCAAACGTGTGTTTGCAGATCGATTTCATCAATG
TCTGACTGAGCCGACTTCAAGGAAAAGAAGGAAGCCAAatttaaacacaa
agaaaagcaTGTCAAACTTTAATGGTACCAAGTATTTGA
Run BLAST on NCBI

transcript from alignment at sc0003443:1..2854+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042466 ID=TCONS_00042466|Name=TCONS_00042466|organism=Clytia hemisphaerica|type=transcript|length=2854bp|location=Sequence derived from alignment at sc0003443:1..2854+ (Clytia hemisphaerica)
TAAGACCGGTGATTGGAAGTCTGGTAACGAGTGTATACAAACATGACTGT
AGCCGGGGGTGCAATATTTCATGACATTGATTTTGTAAATGTAAATAATG
GAGCATTTAGCAAGAATTTCACAATATATGAAGTTAATTTTTATATCTTT
CCAATTCAGGCATAAAAAAAATGTTCATATTACTTTTACTAATTGTCAGT
TAATAAATAGTTAGTTGAAATAACCCCCCGACtacttcttgaaaataaaa
atgaaatacggCGATCTGATTGGCCCGTCATAAAAGTTCTCCATAAAATT
TTTTGAGGCGACAGAgtatttttcaaagcaaaacttCGTGAAGAAAAGAT
GGTCATGGAAATCCTTTTGTCAATATTTCTGGCGATTTGACATCTTCTTT
TTATGGTTCAGAAGATTGCTTGAAGTGGAGGATGCAAGTAACAAGATTAT
AGAAGGGTAAGTGgtaaaaaatttcttctttctgTTTGTTTTCATACAGT
AGTATATCGCCATATACCAAGGAATAAAATATTAACACAGACAGGCTCAA
AAACCTAgggttttaaagaaaatatttttgctgcATTTTGTATTCTGAAC
ATCCTGGTTTCTTCCACCGCTGATCAAGTTTTGAGTGTTCTCGTTCGACT
TTTGGTTTTTAAGCTTTTCATTCCATTTTGTAAACAATAAAGACACAAGG
GGCCACATGAATTCAAGACTTCTTAAGATATACACGTCAAAGCAATAAAA
CAAGGCCCTCTTTTCTCAAAACGTTCGTCTCTGTAGTTTACGTTGTTTTT
CAGGCATTTTAATTGGGTTTAATTAGCTAGCGGTTGgccttttcaatttt
tagaaaaatattttctataatgtgcgtttcgaatgttttgatttagaaac
gttctttttttaaaaaacattcgaatacgaaattcattttgttttgaaca
ttCGAATCACCAAAATTccgaattttttgttttgattctttttattgaaa
cttttttgcgANcattttgttttgaacattCGAATCGCCAAAATGccgaa
ttttttgttttgattctttttattgaaacttttttgtgagCCAAGCATAA
TGTGGTGCTCTTCAGTTTATAAAATGTTGGAATaagattattatttttgc
cattttcatttttaaggaggTTATGCTGAAAAGATGGAGCAAAGACTTTT
GATTGATCATTTTCTCAGGTGAGTGACATTTCTAAGACGATCCTTTCTCT
AATAATTGgctagaaaattctgaaaattaacTCACATCATAATGATTTtc
taaagtttaattttttttgataagttCTTTGGGAAGCAAgtacaaatttc
tttttttctgaaagaacaGAGTCGAGACACAAAagtattttgttcaaaaa
gagACCGGTGAATTGCAATAACTAACTGTGACTTTTGATTAGTTGACAAC
AACTCACTTCAGTGGCGGAAGACAAAATCAGAGAAAGATTTTCGATCAAA
AGGCGTTATTATTTAATCAAAATAAAGGTCTTATTGTCGTGAAACATTAG
TTTCATTCGTATCAGAATACCCTGATTGACTGTTACTTTACCTTTTAGGT
TCGTACCCATGCTACTGGCCCTctggaaaatgcaaaaataactgATTGTT
CAAAGCAAGGTATGCTATTCGTTGGTGTGTTTTAGGTACCACATTTCAAC
TTTATTATTGACGAATAATTCACCCCTCTTTCAGTGTTCCGGTGAGAAAT
TCTTAACCACTTAGGAATGAAATGAAGGAGGTAATCGAGATAACATCGGA
TTAAAGTTTTTGGTTTCTTGACCCTCAACCCTCAACCCTGCTTTCTGTTT
TTATCTTAGGACAAGATTGAGATATTTTAGGCTCTTTATCCAATTTCACT
CTTGAATTTCTTGCAATTCAATTTCGGCTTAGCATTCTTCTTAAATTGTT
GTAGCTTCATTACTATCTAGGGTATATTAAAGAAGAGCTtgtatttataa
agtttttgagGGTTTACCTACTCTTTcccaaaatcaaaacttttctttcc
tCGTTTTTTTTCTCCAGATTCGGTCAACACTATTGCGTAAATCTAACTCG
TCAGTCCAGCTGAACCAAAATATCATCAACATGTTACAGGTAAACCTCAT
AGATACTCGCATGATAAAAATGCTTAGATTTATCCATCGGATTGGGATCA
GCGTTTCTAAATACCCTCTTTATTAAGTACCGAGATTTTGGTAAAACCTT
TCAAGGGAGGCACCAGTTCCctcaaatttatatcaataaaGGTGAAGTGG
AGCTCACATCATGATCTCAAAAAGCTTGCTTTGTAGAATACATTTTCTCA
Gcgagtggggataaaaataatggactaaaactcgatgggaattaatattc
ccatattttttatggctacggatttcaattcttttgtttttaagtcagaa
aaaacaagaaataaaattcagtggggatgagaaaactagcataaaatttt
gcagtgaggatcggTTTTTTGATTATCTTCAATGGGGACAATAGTCTTAC
TAAAAACTGTGACAAGTTAACACCCTTTGTCCCATAGGTTAATAAGTTAT
TTTGGCACACTGCTATCCGGATGGTTACAGTCAATAATTATCacatttct
ttgattttgtcaTACTATTTGTAATTATTTTCATAAATCATTATTTCCCT
TTCAAGGTTGTGCATTAAGAAGAAAGGACTTTCAAACGTGTGTTTGCAGA
TCGATTTCATCAATGTCTGACTGAGCCGACTTCAAGGAAAAGAAGGAAGC
CAAatttaaacacaaagaaaagcaTGTCAAACTTTAATGGTACCAAGTAT
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026300XLOC_026300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042466-exon-sc0003443-1491911889:1..456TCONS_00042466-exon-sc0003443-1491911889:1..456Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1510915933:1..456TCONS_00042466-exon-sc0003443-1510915933:1..456Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1575043694:1..456TCONS_00042466-exon-sc0003443-1575043694:1..456Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1491911889:1167..1218TCONS_00042466-exon-sc0003443-1491911889:1167..1218Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1510915933:1167..1218TCONS_00042466-exon-sc0003443-1510915933:1167..1218Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1575043694:1167..1218TCONS_00042466-exon-sc0003443-1575043694:1167..1218Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1491911889:1599..1659TCONS_00042466-exon-sc0003443-1491911889:1599..1659Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1510915933:1599..1659TCONS_00042466-exon-sc0003443-1510915933:1599..1659Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1575043694:1599..1659TCONS_00042466-exon-sc0003443-1575043694:1599..1659Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1491911889:2068..2139TCONS_00042466-exon-sc0003443-1491911889:2068..2139Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1510915933:2068..2139TCONS_00042466-exon-sc0003443-1510915933:2068..2139Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1575043694:2068..2139TCONS_00042466-exon-sc0003443-1575043694:2068..2139Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1491911889:2707..2854TCONS_00042466-exon-sc0003443-1491911889:2707..2854Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1510915933:2707..2854TCONS_00042466-exon-sc0003443-1510915933:2707..2854Clytia hemisphaericaexon
TCONS_00042466-exon-sc0003443-1575043694:2707..2854TCONS_00042466-exon-sc0003443-1575043694:2707..2854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003443supercontigsc0003443:1..2854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782274	0	0.431793	0.718492	0.976252	0.72265	0.593853	0.445867	1.04632	1.82531	1.45822	1.18103	0.65807	0.717195	0.155041	0.606702	2.21555	1.48023	0.165277	0.323436	5.60476	5.41326	0.317909	0.781566	1.57095	1.68593	1.05638	1.53983	0.724319	0.891298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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