TCONS_00042463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042463
Unique NameTCONS_00042463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042463 ID=TCONS_00042463|Name=TCONS_00042463|organism=Clytia hemisphaerica|type=transcript|length=163bp
ATTCTATTTTGCAATCAAATGTCTTTGAACCtagaaaaatcatacaaaag
cAAACttctgaagaattttttttagtaaTAATCTTCCTTGACGACCTACC
GTATGTAGCGTCAGGATGAGATTGAATAAACAATAACGCCGTGTTTGTAA
CACTGTTCAGTGT
Run BLAST on NCBI

transcript from alignment at sc0003441:4225..4387

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042463 ID=TCONS_00042463|Name=TCONS_00042463|organism=Clytia hemisphaerica|type=transcript|length=163bp|location=Sequence derived from alignment at sc0003441:4225..4387 (Clytia hemisphaerica)
ACACTGAACAGTGTTACAAACACGGCGTTATTGTTTATTCAATCTCATCC
TGACGCTACATACGGTAGGTCGTCAAGGAAGATTAttactaaaaaaaatt
cttcagaaGTTTgcttttgtatgatttttctaGGTTCAAAGACATTTGAT
TGCAAAATAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026297XLOC_026297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042463-exon-sc0003441-1491911889:4225..4387TCONS_00042463-exon-sc0003441-1491911889:4225..4387Clytia hemisphaericaexon
TCONS_00042463-exon-sc0003441-1510915933:4225..4387TCONS_00042463-exon-sc0003441-1510915933:4225..4387Clytia hemisphaericaexon
TCONS_00042463-exon-sc0003441-1575043694:4225..4387TCONS_00042463-exon-sc0003441-1575043694:4225..4387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003441supercontigsc0003441:4225..4387 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top