TCONS_00042455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042455
Unique NameTCONS_00042455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042455 ID=TCONS_00042455|Name=TCONS_00042455|organism=Clytia hemisphaerica|type=transcript|length=680bp
TTGGGTGTCATCCTCAAAATTAAGTgtcaatggaaatttggaaagatctt
tccccaaaaatatttttgaactaaaaaaatgtaaaataactaccttcaaa
atgtttaataatATCAAAAAGGCGCTAATAATTAAGGGGGGCATAATCCA
CACTTTGGCCAGGACAAGTTGTTTTAGGACATTTTTAGGGTGCTGATTCC
GGAAATCATActcatttttggctgaaaatcaatattcagatttattttat
aatttagCTTTCCTTGCTAACATTCGTTATAGTTTGATGCTCAACTGTGT
aaataaaaaccaagtttttcctaagatcccacagtgtaaactaTATAATT
CAGATTGGTTTGATCTTTGAAGGCGCAATGACAATATCCAATAcaaagcc
aaatttaaaaaatatttgactaTTTCTGCCATTTTAGTACTTTGGCCAAC
TTGGAAACACAGAAATGCCTATTTTGCGGCATTCTGGCCAACTTGTTGCA
TAGCGTTAGCAAGCTGAATATtgaatttcagccaaaatgagTATGATTTT
CGGAATCAGCAcccaaaaaatgtccaaaaacaaCTTGTCCAGgtagaaaa
tcgaaaaaaggtCGATTATGTCCCCATCCTATAATAATGCGTAACAAATA
AGTCGTGGCAGTAAAaagcacaaaatcgtg
Run BLAST on NCBI

transcript from alignment at sc0003433:8113..8792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042455 ID=TCONS_00042455|Name=TCONS_00042455|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0003433:8113..8792 (Clytia hemisphaerica)
cacgattttgtgcttTTTACTGCCACGACTTATTTGTTACGCATTATTAT
AGGATGGGGACATAATCGaccttttttcgattttctacCTGGACAAGttg
tttttggacattttttgggTGCTGATTCCGAAAATCATActcattttggc
tgaaattcaATATTCAGCTTGCTAACGCTATGCAACAAGTTGGCCAGAAT
GCCGCAAAATAGGCATTTCTGTGTTTCCAAGTTGGCCAAAGTACTAAAAT
GGCAGAAAtagtcaaatattttttaaatttggctttgTATTGGATATTGT
CATTGCGCCTTCAAAGATCAAACCAATCTGAATTATAtagtttacactgt
gggatcttaggaaaaacttggtttttatttACACAGTTGAGCATCAAACT
ATAACGAATGTTAGCAAGGAAAGctaaattataaaataaatctgaatatt
gattttcagccaaaaatgagTATGATTTCCGGAATCAGCACCCTAAAAAT
GTCCTAAAACAACTTGTCCTGGCCAAAGTGTGGATTATGCCCCCCTTAAT
TATTAGCGCCTTTTTGATattattaaacattttgaaggtagttattttac
atttttttagttcaaaaatatttttggggaaagatctttccaaatttcca
ttgacACTTAATTTTGAGGATGACACCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026290XLOC_026290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042455-exon-sc0003433-1491911889:8113..8792TCONS_00042455-exon-sc0003433-1491911889:8113..8792Clytia hemisphaericaexon
TCONS_00042455-exon-sc0003433-1510915933:8113..8792TCONS_00042455-exon-sc0003433-1510915933:8113..8792Clytia hemisphaericaexon
TCONS_00042455-exon-sc0003433-1575043694:8113..8792TCONS_00042455-exon-sc0003433-1575043694:8113..8792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003433supercontigsc0003433:8113..8792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.39481	0.293812	0.085286	0	4.0566	3.01183	0.773613	2.1018	0.9108	0.702013	0.875073	1.13967	0.383205	0	0.232537	0.276356	0.565457	0.190646	0.160143	0	0.837231	0.319706	0.172731	0.169975	1.24498	1.35867	0.121807	0.110228	0.167208	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top