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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042453 ID=TCONS_00042453|Name=TCONS_00042453|organism=Clytia hemisphaerica|type=transcript|length=849bp
ATGACTCAACAACAAATGCTCTCCGCGATTACATAAAAGGCCTGATGGTC
ATTGACGAAACTGTTTTCAGAGATGTGGTCATATGTTATTTTCGTTCGAA
GAAAAATTACTTCCTTAAGAGAAAGAAGAACCCTCATTACCTCTCAGAAG
CTGCCAGCCGACAAAGGAAAATTACAAAAGTGAAAAATCGTAAAGCTGCT
TTAAAGTTAAAGACATCCATACCAGAAGATAAAAAGCCTGCGATTCTCGA
GTGTTTGACTGTGGAGTTGGTTTCGTCTGATGAAGAGGTCATGGACGAAA
ATgaagagaaatattttttggtgCATCCGTTACCGTGGCGTTCAAAATAT
TACGGACAGCTCACAAGAGCTCTGGACCAAAAATTTCAGGACAATCAAAG
TAAGAAAGGTAAAGACCAGACCGCTCCTAGAGAAATCGGAGAAGATTCTA
CAAGACCAATGCCTCTCTACCCTGAGAGATGTTCTTGGGCTTTCAAACTA
TGAGATTAAGTTGAGAATGAGGAGAAATCTTTTTTGGTTTATCCATATCT
TATACTAACCCTGatctgaaagttttttgtttctttctttgcTAGCAACT
TAAAACTTTTGCTCgttttttgatcatgtgattcaATAATGAACAAACCA
TGATCAAAACTGGACCAATCGATTTTTTGAAAGGTAAAGCTAGCAAATGG
TTACAACAATTAGACTTCCAGACTAGGATTTTTATACAGACTTTAGTTCA
TCTACATCtgtgaaaattttgttattatGTTTCAGATTTTTGATATACTT
TTCTGACCATGTGTTGCCCACTGTGTGCGGATTGACTTTCGGAATTCAC Run BLAST on NCBI protein sequence of TCONS_00042453-protein >TCONS_00042453-protein ID=TCONS_00042453-protein|Name=TCONS_00042453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
DSTTNALRDYIKGLMVIDETVFRDVVICYFRSKKNYFLKRKKNPHYLSEA
ASRQRKITKVKNRKAALKLKTSIPEDKKPAILECLTVELVSSDEEVMDEN
EEKYFLVHPLPWRSKYYGQLTRALDQKFQDNQSKKGKDQTAPREIGEDST
RPMPLYPERCSWAFKL Run BLAST on NCBI transcript from alignment at sc0003431:10228..11561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042453 ID=TCONS_00042453|Name=TCONS_00042453|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0003431:10228..11561+ (Clytia hemisphaerica)
ATGACTCAACAACAAATGCTCTCCGCGATTACATAAAAGGCCTGATGGTC
ATTGACGAAACTGTTTTCAGAGGTAAACATTTTtcattaccttaaaggaa
gaaattttggcagattTGACCAAAAcctgccaaaatttattttttccgcc
atccgccaaattaaacattttgaaaatattatctcttttaaggtgttttt
gctattttttcgctgttttgacgccatcttcttaaggttaaattaagcaa
caacaaaaaaacaggcaaaaCTACTCTGGGGAGCTGTCTGGGAATTGTGC
AGTAGGAAgtcttaaattctttttttctggTTAAAACTAACATaactttt
aaattgaaatttgaaacatTATATTTTGCAGATGTGGTCATATGTTATTT
TCGTTCGAAGAAAAATTACTTCCTTAAGAGAAAGAAGAACCCTCATTACC
TCTCAGAAGCTGCCAGCCGACAAAGGAAAATTACAGTAAGACATATTGAA
AATTATTGGCTATAATATATATGTGTCCAGCCacattttgagaattttct
gATTTATAAGGGGTCGTTTTCTATTaaattctatttaaaaaaatgtttta
ttttaaagTGCAGGCGAGTCTCTACCCCCTCCCTTAATGCCTATCCCCTC
TTGTTTTTCAGAAAGTGAAAAATCGTAAAGCTGCTTTAAAGTTAAAGACA
TCCATACCAGAAGATAAAAAGCCTGCGATTCTCGAGTGTTTGACTGTGGA
GTTGGTTTCGTCTGATGAAGAGGTCATGGACGAAAATgaagagaaatatt
ttttggtgCATCCGTTACCGTGGCGTTCAAAATATTACGGACAGCTCACA
AGAGCTCTGGACCAAAAATTTCAGGACAATCAAAGTAAGAAAGGTAAAGA
CCAGACCGCTCCTAGAGAAATCGGAGAAGATTCTACAAGACCAATGCCTC
TCTACCCTGAGAGATGTTCTTGGGCTTTCAAACTATGAGATTAAGTTGAG
AATGAGGAGAAATCTTTTTTGGTTTATCCATATCTTATACTAACCCTGat
ctgaaagttttttgtttctttctttgcTAGCAACTTAAAACTTTTGCTCg
ttttttgatcatgtgattcaATAATGAACAAACCATGATCAAAACTGGAC
CAATCGATTTTTTGAAAGGTAAAGCTAGCAAATGGTTACAACAATTAGAC
TTCCAGACTAGGATTTTTATACAGACTTTAGTTCATCTACATCtgtgaaa
attttgttattatGTTTCAGATTTTTGATATACTTTTCTGACCATGTGTT
GCCCACTGTGTGCGGATTGACTTTCGGAATTCAC Coding sequence (CDS) from alignment at sc0003431:10228..11561+ >TCONS_00042453 ID=TCONS_00042453|Name=TCONS_00042453|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0003431:10228..11561+ (Clytia hemisphaerica)
GACTCAACAACAAATGCTCTCCGCGATTACATAAAAGGCCTGATGGTCAT
TGACGAAACTGTTTTCAGAGATGTGGTCATATGTTATTTTCGTTCGAAGA
AAAATTACTTCCTTAAGAGAAAGAAGAACCCTCATTACCTCTCAGAAGCT
GCCAGCCGACAAAGGAAAATTACAAAAGTGAAAAATCGTAAAGCTGCTTT
AAAGTTAAAGACATCCATACCAGAAGATAAAAAGCCTGCGATTCTCGAGT
GTTTGACTGTGGAGTTGGTTTCGTCTGATGAAGAGGTCATGGACGAAAAT
gaagagaaatattttttggtgCATCCGTTACCGTGGCGTTCAAAATATTA
CGGACAGCTCACAAGAGCTCTGGACCAAAAATTTCAGGACAATCAAAGTA
AGAAAGGTAAAGACCAGACCGCTCCTAGAGAAATCGGAGAAGATTCTACA
AGACCAATGCCTCTCTACCCTGAGAGATGTTCTTGGGCTTTCAAACTATG
AGACTCAACAACAAATGCTCTCCGCGATTACATAAAAGGCCTGATGGTCA
TTGACGAAACTGTTTTCAGAGATGTGGTCATATGTTATTTTCGTTCGAAG
AAAAATTACTTCCTTAAGAGAAAGAAGAACCCTCATTACCTCTCAGAAGC
TGCCAGCCGACAAAGGAAAATTACAAAAGTGAAAAATCGTAAAGCTGCTT
TAAAGTTAAAGACATCCATACCAGAAGATAAAAAGCCTGCGATTCTCGAG
TGTTTGACTGTGGAGTTGGTTTCGTCTGATGAAGAGGTCATGGACGAAAA
TgaagagaaatattttttggtgCATCCGTTACCGTGGCGTTCAAAATATT
ACGGACAGCTCACAAGAGCTCTGGACCAAAAATTTCAGGACAATCAAAGT
AAGAAAGGTAAAGACCAGACCGCTCCTAGAGAAATCGGAGAAGATTCTAC
AAGACCAATGCCTCTCTACCCTGAGAGATGTTCTTGGGCTTTCAAACTAT
GAGACTCAACAACAAATGCTCTCCGCGATTACATAAAAGGCCTGATGGTC
ATTGACGAAACTGTTTTCAGAGATGTGGTCATATGTTATTTTCGTTCGAA
GAAAAATTACTTCCTTAAGAGAAAGAAGAACCCTCATTACCTCTCAGAAG
CTGCCAGCCGACAAAGGAAAATTACAAAAGTGAAAAATCGTAAAGCTGCT
TTAAAGTTAAAGACATCCATACCAGAAGATAAAAAGCCTGCGATTCTCGA
GTGTTTGACTGTGGAGTTGGTTTCGTCTGATGAAGAGGTCATGGACGAAA
ATgaagagaaatattttttggtgCATCCGTTACCGTGGCGTTCAAAATAT
TACGGACAGCTCACAAGAGCTCTGGACCAAAAATTTCAGGACAATCAAAG
TAAGAAAGGTAAAGACCAGACCGCTCCTAGAGAAATCGGAGAAGATTCTA
CAAGACCAATGCCTCTCTACCCTGAGAGATGTTCTTGGGCTTTCAAACTA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042453-exon-sc0003431-1491911889:10228..10299 | TCONS_00042453-exon-sc0003431-1491911889:10228..10299 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1510915933:10228..10299 | TCONS_00042453-exon-sc0003431-1510915933:10228..10299 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1575043694:10228..10299 | TCONS_00042453-exon-sc0003431-1575043694:10228..10299 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1491911889:10609..10712 | TCONS_00042453-exon-sc0003431-1491911889:10609..10712 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1510915933:10609..10712 | TCONS_00042453-exon-sc0003431-1510915933:10609..10712 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1575043694:10609..10712 | TCONS_00042453-exon-sc0003431-1575043694:10609..10712 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1491911889:10889..11561 | TCONS_00042453-exon-sc0003431-1491911889:10889..11561 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1510915933:10889..11561 | TCONS_00042453-exon-sc0003431-1510915933:10889..11561 | Clytia hemisphaerica | exon |
| TCONS_00042453-exon-sc0003431-1575043694:10889..11561 | TCONS_00042453-exon-sc0003431-1575043694:10889..11561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003431 | supercontig | sc0003431:10228..11561 + |
Blast
The following BLAST results are available for this feature:
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