TCONS_00042450 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042450
Unique Name	TCONS_00042450
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1023

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003429:7283..11645-

transcript sequence

>TCONS_00042450 ID=TCONS_00042450|Name=TCONS_00042450|organism=Clytia hemisphaerica|type=transcript|length=1023bp
AAAGGAAACCCTCAGCTAAACTTGCTGACAATATCGGAGAGGACACTGGG
CCATTACTCAGAATTCTTTACACCGTGGAGGAGAGTAATGGTAAAAGGAT
GCAGCAGACACTACCCTATTCCAGGCTGAAACCCAAATGCTTGACTACCG
GCGAGGAAGTACATGTTAAAGATTTGGCTGAACTGCGCCATTATAACTTT
TTATACCCCCATTCTGACGTGTACTACGAAGCCATACTTAtggaaataaa
gaagaaaaagaggACGATGACAGAAGATGTTCCAATTTCAGAAGATAGTC
TTGAGATGCTCAACGATTCCAATGCTGCCACAACTCATCCAAGTCAAGGA
GGAAAGACAACcaaacagaagaaaaagaagcaaaagTGCAATAATGATGA
ATTCAAACAACAAGTTGATGGACGCAAAAAGCCAGCTGGCATCGAAGTGG
AGAATCTCACCAACAATGGACAAGGTGACGTTGAAGCCATAACAGCTCAG
AAACAAAAAGcCAAAGACAACCAAACTAAGCAGGCAAAGGCAAAAGCCAC
AAAGATGCTCACACAGGAAATTCTGGAAAAAAAAGAAGCATCAATCAAAA
TAAATCTGAGTGGAGATTTACTAGATAAATTTGTTGATATGGATGAAATT
AACTATCAAGCCAATGACATGAATGATTCTGAAGACTTTGAAATCATCCA
AACCAATGTGGACCAACAGCAAAATACAGAATTCAAACCACCCAAACAGT
ACCAGCCATCATATCAACACAATTCTTCCCaattcaaatttccaccaaGC
CAAGAATCAACACAAATtaaaccaccaccaccaccaccaccacaacAATT
CCAACAGCCACAAGTAGCTAAACGAAAAACTGTCCTGGACCAAGCAACTC
CACCTTTCCGAAATCACCAAGAATACACCGAAGCCCAGAgGAACATGGAT
CTTGCTCCAGCTCCTCTCAAACTACCTAATTCTGATTTTGTTCAAGaaag
aTCACCTGTTTATCACCATTTGG

Run BLAST on NCBI

transcript from alignment at sc0003429:7283..11645-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042450 ID=TCONS_00042450|Name=TCONS_00042450|organism=Clytia hemisphaerica|type=transcript|length=4363bp|location=Sequence derived from alignment at sc0003429:7283..11645- (Clytia hemisphaerica)
AAAGGAAACCCTCAGCTAAACTTGCTGACAATATCGGTAAGATTATTGTA
ATTTTCAATCGCTCATACCTACTGAAGAGCCTATCATTTTTCGGCTTTTA
GTCTGGTGAATTAGATTTGTAAAATCTGGTCTTCGTGAAAATTTATTCTG
ATTCAGGTAAGGCACAGATTCTTTCTTTAACATGGTCCGGACTAAATAAT
TGATTAATTCCTTTAGGAGAGGACACTGGGCCATTGCTCAGAATTCTTTA
CACCGTGGAGGAGAGTAATGGCNAAAGAGAAAGGAAACCCTCAGCTAAAC
TTGCTGACAATATCGGTAAGATGATTGTAATTTTCAATCGCTCATATCTA
CTGAAGAGCCTATCAAATGTGGTCTTCGTGAAAATTTATTCTGATTCAGG
TTAGGCACAGATTCTTCCTTTAACATGGTCCGGACTAAATAATTGATTAT
TTCCTTTAGGAGAGGACACTGGGCCATTACTCAGAATTCTTTACACCGTG
GAGGAGAGTAATGGTAAAAGGATGCAGCAGACACTACCCTATTCCAGGCT
GAAACCCAAATGCTTGACTACCGGCGAGGAAGTACATGTTAAAGATTTGG
CTGAACTGCGCCATTATAACTTTTTATACCCCCATTCTGACGTGTACTAC
GAAGCCATACTTATGGAAATAAAGAAGAAAAAGAGGACGATGACAGGTTT
GGTTAAACATTACATTTATTTCATTTATTCATTTTGAGGCAATTTGTTTG
GATGAGTTTATGTCCATACTTTTGAGACCAACTTTAGGTCTTTCCATAGA
AATACACGAATATGGTGAAGCCATTTATCTGGTTCGGACAATTGGATCCT
GAAAATAAAGATAAAGTAACTAACTATCATAAGAGCTTGAAATTCTCAGA
AAGGTGAAATCGGATAAAAATGTCAACAAAAACCCTGACAATGTGTAAAA
TAAAACAGATCAAATTTTCCAGGAAGGCTATGCCTGGGAAACAGATGTTT
AAAAAAGGACCTCGCTGGATGCTTTCGATGCTTCTAAGTGCGATGCTTAT
AAAAAAACATGTATTTCACAATCAGTAAATGAAATAAAATTTCAAATACC
TCTTTCAATTTCAGAAGATGTTCCAATTTCAGAAGATAGTCTTGAGATGC
TCAACGATTCCAATGCTGCCACAACTCATCCAAGTCAAGGAGGTATGCTA
TAAGAAATTTAAAGATATAAGAACAGCACCAGTTTCCAGAAAGAGGCTTC
TTCTATAGTGATAGAGGAATTTTAGACAAATACTAATTCCAATCAAAGTT
TTTCAAAGATGTGATACTTTAGAGATTAAATTGATTTAATAACTTATCAT
GATAGTTTCATCTTGCTTGTCACATCAGCTAAATACTTAAGGCTTTTAAC
AACTGCAGATAATTGTAGCTATTTTTCTGGTACTCATTTTCAGGAAAGAC
AACCAAACAGAAGAAAAAGAAGCAAAAGTGCAATAATGGTATATTATTTA
TAAGTCACATTCCACAAAGTTTTGCTTTAAATGACGACCAACCATATTGA
TCTTGTTTTTAAATAATAAAGAGGGAAAAATGAAAAGTAATATAAATTCA
ATAAGGCTTGCCATTTTCTTGTGGATGTCGTTAGGAAAATTCATAGCTTT
GGAAGACAAGGAAGCCCTAATATTTTGTCTTATTTTTGACAAATTTACAT
GGATTTGAATCATTTAGATAAAAATTTACAAATGAAAACTACATTGACAA
CCTATGTCTAATTTTTCATTTTTGATGTAAAAAATTAAAACAATTTTTGA
TCTCTTTGCAATTTTTCACAAATTTTTCTGCATAAAGCATAAAAAATCAA
TCAAAGCTGAAGGAAGGAACCTTTAATAAACACAACACTACCATGCAAAC
TCCCTTGTTAATTGACCTTGGAAAAATTTCCCAGAATAGCCCTCAATCAG
TCAGTATTAGGTAACAACGCTAATCTTCACTCTTCCCCTGACCACTTTTG
CTTTCGTAAGTAAGTGAACTATTACCTCTATCTCCAGATGAATTCAAACA
ACAAGTTGATGGACGCAAAAAGCCAGCTGGCATCGAAGTGGAGAATCTCA
CCAACAATGGACAAGGTTCCACCAACTATTTCGTTTCCTTTAAATAAAAA
TGAAGTTAATTCTGTTAAGCCTACAATAAATTTCATTATACTGGCTGTAA
TTTTTGTGATCAAAACTCATCTGCAAAGTTAAAAGATTTGACAGGGACTT
AATTTCACAGATGGCAATATTAGAGGACAACTCTTTCATGGTTTTGTGCC
TGTGCATTTTACTACCAAGTAATCCATGTTTGTTGTTGAAATATACATTA
TTAGCACTTGTCTGATGCCAGTAAACATTTAAGATAAGTTGCTCGACATT
TTTAGAGACTTGTTTGAAAATGTCTTACAGATAACACCTGCAGAATTTAA
AAGTAGAAGGATTGACAAGAACTTTTATCAATTTTTTTAACAGGTGACGT
TGAAGCCATAACAGCTCAGAAACAAAAAGGTACATGAAGAATTCCTACGT
TATGGCCATTATAAACTCTGTACTTGCACATTAAGTATTTGTGCAAAAAA
AATTAATGGTAAATTCTATCCACATCCCATTCATTACTTTTTTTAAATCT
TAGCCAAAGACAACCAAACTAAGCAGGCAAAGGCAAAAGCCACAAAGATG
CTCACACAGGAAATTCTGGAAAAAAAAGGTATAATAACTTTTATTGTCCA
CCTCTAAGCAAAACGCACTTTGGACCCTCAGCTTTGCTTTGTTGAATATC
ATCAAGCTTGACTGAATAATTTTCGACATCTGATTTTTCTTGTCGAATAT
CTGCTTAATATTAACTTATCGAAGGTTAGAAAGTAAATCTGTGCTATGAC
TCTAATTGATTCAAAAATAATTAGTACAAAGAAAACATCATCAGCCATTC
ATTTTATACGACTAATTTGGAACTTCACGTTTTTGAAACAGTTTTCTTTT
TCTACAGAAGCATCAATCAAAATAAATCTGAGTGGAGATTTACTAGATAA
ATTTGTTGATATGGATGAAATTAACTATCAAGCCAATGACATGAATGATT
CTGAAGGTAACTTTAGTAGGAACTTGTGATATTTGAATAAAATAAGACTG
CACACACCCCTCTGATTTGTTTTGGTGTAATTTGGATTTTTAATAAACCT
TTTACATTGTGTAGCTTGCCAGTACAATAAATTTGTTCAATAAATGAGAA
TTTGTAATTTCAAGAACGAAAACAACTTAATGATGTAATGATTTCAATGT
AAAATTGAAGGTTGACTTGAATTAAATAAATTATTTCTCAGACTTTGAAA
TCATCCAAACCAATGTGGACCAACAGCAAAATACAGAATTCAAACCACCC
AAACAGTACCAGCCATCATATCAACACAATTCTTCCCAATTCAAATTTCC
ACCAAGCCAAGAATCAACACAAATTAAACCACCACCACCACCACCACCAC
AACAATTCCAACAGCCACAAGTAGCTAAACGAAAAACTGTCCTGGACCAA
GCAACTCCACCTTTCCGAAATCACCAAGAATACACCGAAGCCCAGAGTAA
GACGTTATTATAATTTATTCATTTACATATTGCTTCTTTCAAAATTACTA
ACCAATTCTTGAATTAAAAAGAAAATTTTGAAGATTAAAAATTTATTAGC
GTTTATTATTTTATTAGCATACCGTAAATCACCGATTAAGCGCCCGGGCG
CTTATTTAATTTTTCAGGCTCTGAGAGGGGCGCTTATTCAAGCGGGGCGC
TTATTTTTTTATTTCAGAAATTCGTATATCAACAAATTCGGAATCTGCTT
AAACTTAACTTCAAAAAAGGATAAATAAAAGAAAAATCCAATAAGAAACA
GTAAAAAAGCTAAAAGACCTTGATTTTTATTTTTGTTCCAATTTTTTTCG
ACTGTTAATCATCTGAAGAGAAATTCTTATCCTGGAAATTAGCCTATTAT
TCGAGCGGGGCGCTTAATCGGTGATTTACGGTACATGGTCTGTTATTCGT
TCCTTGAATTTTTCAACATGACCTGACATCACATCAATATTTTAATTTTA
GGGAACATGGATCTTGCTCCAGCTCCTCTCAAACTACCTAATTCTGATTT
TGTTCAAGGTATGGAAAAAGTAATCTAGATTTCGTTTTTAAGTAGTTTTC
TAAAAAAGAGGCTTGAGGTAAATAATTATTAAACTTAAGCTTTTCACCAG
GGGAGTGTTTATTGAGACCTTTAACTCTTGATCATTTTAAATGTTGTCAA
AACAGTTATATTGATATAAGTTGTTTCAATTTTCAGAAAGATCACCTGTT
TATCACCATTTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026285	XLOC_026285	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003429	supercontig	sc0003429:7283..11645 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.318422	0.197733	0.141604	0.5334	0.314176	0.672431	0.532284	0.532927	1.00363	1.21563	0.794594	0	0	0.206425	0.11477	0	0.241238	0	0	0.477228	2.5639	0.152401	0.856157	0.526404	0.300139	0.341409	0	0	0.557475

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042450 vs. Swiss-Prot (Human)

BLAST of TCONS_00042450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042450 (transcript) - C. hemisphaerica