TCONS_00042443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042443
Unique NameTCONS_00042443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042443 ID=TCONS_00042443|Name=TCONS_00042443|organism=Clytia hemisphaerica|type=transcript|length=329bp
CCTTCCAAGTCAATAAGAAGACCCGCCAAATGTACATAGTGTAAATATTG
TTGGTATTGAACATTAAACTTCTGTTGACATTATGTTATTGATGCAGAAA
CACTTCTGAGATTGATTTGGTCTCAGATTCAAGACACACACACTTATGTT
TCGTTACGTTATGTTACAACACGATGTACAACACTGGATCACAAAGATGT
CGATCAATACAAGATTCGTCCGGCCGGAATCTGTTAACATTCTTCTTCTA
GTcgaataattaaataaagaagtgaTCCTGTTGGTTGATGTCCAACTATT
GTGAATGGTGAGTAACAACCAATTTACat
Run BLAST on NCBI

transcript from alignment at sc0003427:19666..19994

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042443 ID=TCONS_00042443|Name=TCONS_00042443|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0003427:19666..19994 (Clytia hemisphaerica)
atGTAAATTGGTTGTTACTCACCATTCACAATAGTTGGACATCAACCAAC
AGGAtcacttctttatttaattattcgACTAGAAGAAGAATGTTAACAGA
TTCCGGCCGGACGAATCTTGTATTGATCGACATCTTTGTGATCCAGTGTT
GTACATCGTGTTGTAACATAACGTAACGAAACATAAGTGTGTGTGTCTTG
AATCTGAGACCAAATCAATCTCAGAAGTGTTTCTGCATCAATAACATAAT
GTCAACAGAAGTTTAATGTTCAATACCAACAATATTTACACTATGTACAT
TTGGCGGGTCTTCTTATTGACTTGGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026281XLOC_026281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042443-exon-sc0003427-1491911889:19666..19994TCONS_00042443-exon-sc0003427-1491911889:19666..19994Clytia hemisphaericaexon
TCONS_00042443-exon-sc0003427-1510915933:19666..19994TCONS_00042443-exon-sc0003427-1510915933:19666..19994Clytia hemisphaericaexon
TCONS_00042443-exon-sc0003427-1575043694:19666..19994TCONS_00042443-exon-sc0003427-1575043694:19666..19994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003427supercontigsc0003427:19666..19994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87309	1.47745	2.98698	3.41472	2.12542	1.77403	2.14652	2.28951	3.17037	1.25882	2.8336	0.474214	1.19401	1.45229	0.417686	0.582667	0.814367	0.941999	1.68945	0.756518	2.23076	1.67135	0.979271	1.26832	2.17798	2.18685	0	1.45386	0.521189	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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