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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042437 ID=TCONS_00042437|Name=TCONS_00042437|organism=Clytia hemisphaerica|type=transcript|length=918bp
AAACAACTTACGCGCATCTATTGTGTTTCTATATGACTTTTTGTATCATG
AATGACATGATATTAAAGGTTCCTTTAATGACCATTTCTTTCAGTTTAAA
TGTATTTAGTTATTTTTTTAttatgttACTTTTTTTTGGTTTAGCGAGCA
GTGGGAGCAAATTTTTTGTGTTATGTTGTTTGAGGGTTGTTGAACACAGC
AGGATGTTATGGGTGTAAGTCTTAGACAGTACAGAGCATGCATTGGATGT
TTCAATAACTTACGTTTGAAATACCATGGTAAGCTTAGTTATTCTTCTGG
CTTATGTACCCTACAAAACCTACTTTTTATATTCATATTTCTTTGCTTTA
TTTTATCCGGTGACGTTGAAGTTAACCCTGGGCTGGAAAAGGAGACCACG
CTAAGTATTTGTCACTGGAATCTGAATAGTGTTTGGGTTGAAGATTCTGT
GGGAGATTTTATTAAGATCAAGCAACTTTCTGCATTTTTGAACATTTACA
AATTTGACATCGTTTGTTTGGGTGAAACTTTTTTGAATTCTGAGATAAAA
GATGACGATCCTAGGCTGGCTATTGATAATTATGAGATCAAAAGATGCGA
CCATCCCTCTAATAATAAGAGAGGTGGTGTTTTTATCTATTGCCGAGATC
ATCTAGATCTCGATGTGAAACCACAACTCACTACATTGGACGAATGTCTT
GTAGCTGAGATGAAAACCGGTGGGAACCGGTTTtttctttctcttcgtTA
TCGCTCCCCCAGTCAGACTTCTGATGAGTTTGAGGTTTTCTCTCGTAAAT
GGGAGGAGACAATTATAAACATTAATAATTTTTCTCCGACTGCTACAATT
TTTCTTGGGGATTTTAATGTCAAGAATTCTGACTGGTGGGGCGGTGACGT
CACTGATCCTGGTGGTAG Run BLAST on NCBI protein sequence of TCONS_00042437-protein >TCONS_00042437-protein ID=TCONS_00042437-protein|Name=TCONS_00042437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MGVSLRQYRACIGCFNNLRLKYHGKLSYSSGLCTLQNLLFIFIFLCFILS
GDVEVNPGLEKETTLSICHWNLNSVWVEDSVGDFIKIKQLSAFLNIYKFD
IVCLGETFLNSEIKDDDPRLAIDNYEIKRCDHPSNNKRGGVFIYCRDHLD
LDVKPQLTTLDECLVAEMKTGGNRFFLSLRYRSPSQTSDEFEVFSRKWEE
TIININNFSPTATIFLGDFNVKNSDWWGGDVTDPGG Run BLAST on NCBI transcript from alignment at sc0003421:6454..7371 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042437 ID=TCONS_00042437|Name=TCONS_00042437|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0003421:6454..7371 (Clytia hemisphaerica)
CTACCACCAGGATCAGTGACGTCACCGCCCCACCAGTCAGAATTCTTGAC
ATTAAAATCCCCAAGAAAAATTGTAGCAGTCGGAGAAAAATTATTAATGT
TTATAATTGTCTCCTCCCATTTACGAGAGAAAACCTCAAACTCATCAGAA
GTCTGACTGGGGGAGCGATAacgaagagaaagaaaAAACCGGTTCCCACC
GGTTTTCATCTCAGCTACAAGACATTCGTCCAATGTAGTGAGTTGTGGTT
TCACATCGAGATCTAGATGATCTCGGCAATAGATAAAAACACCACCTCTC
TTATTATTAGAGGGATGGTCGCATCTTTTGATCTCATAATTATCAATAGC
CAGCCTAGGATCGTCATCTTTTATCTCAGAATTCAAAAAAGTTTCACCCA
AACAAACGATGTCAAATTTGTAAATGTTCAAAAATGCAGAAAGTTGCTTG
ATCTTAATAAAATCTCCCACAGAATCTTCAACCCAAACACTATTCAGATT
CCAGTGACAAATACTTAGCGTGGTCTCCTTTTCCAGCCCAGGGTTAACTT
CAACGTCACCGGATAAAATAAAGCAAAGAAATATGAATATAAAAAGTAGG
TTTTGTAGGGTACATAAGCCAGAAGAATAACTAAGCTTACCATGGTATTT
CAAACGTAAGTTATTGAAACATCCAATGCATGCTCTGTACTGTCTAAGAC
TTACACCCATAACATCCTGCTGTGTTCAACAACCCTCAAACAACATAACA
CAAAAAATTTGCTCCCACTGCTCGCTAAACCAAAAAAAAGTaacataaTA
AAAAAATAACTAAATACATTTAAACTGAAAGAAATGGTCATTAAAGGAAC
CTTTAATATCATGTCATTCATGATACAAAAAGTCATATAGAAACACAATA
GATGCGCGTAAGTTGTTT Coding sequence (CDS) from alignment at sc0003421:6454..7371 >TCONS_00042437 ID=TCONS_00042437|Name=TCONS_00042437|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0003421:6454..7371 (Clytia hemisphaerica)
ACCACCAGGATCAGTGACGTCACCGCCCCACCAGTCAGAATTCTTGACAT
TAAAATCCCCAAGAAAAATTGTAGCAGTCGGAGAAAAATTATTAATGTTT
ATAATTGTCTCCTCCCATTTACGAGAGAAAACCTCAAACTCATCAGAAGT
CTGACTGGGGGAGCGATAacgaagagaaagaaaAAACCGGTTCCCACCGG
TTTTCATCTCAGCTACAAGACATTCGTCCAATGTAGTGAGTTGTGGTTTC
ACATCGAGATCTAGATGATCTCGGCAATAGATAAAAACACCACCTCTCTT
ATTATTAGAGGGATGGTCGCATCTTTTGATCTCATAATTATCAATAGCCA
GCCTAGGATCGTCATCTTTTATCTCAGAATTCAAAAAAGTTTCACCCAAA
CAAACGATGTCAAATTTGTAAATGTTCAAAAATGCAGAAAGTTGCTTGAT
CTTAATAAAATCTCCCACAGAATCTTCAACCCAAACACTATTCAGATTCC
AGTGACAAATACTTAGCGTGGTCTCCTTTTCCAGCCCAGGGTTAACTTCA
ACGTCACCGGATAAAATAAAGCAAAGAAATATGAATATAAAAAGTAGGTT
TTGTAGGGTACATAAGCCAGAAGAATAACTAAGCTTACCATGGTATTTCA
AACGTAAGTTATTGAAACATCCAATGCATGCTCTGTACTGTCTAAGACTT
ACACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042437-exon-sc0003421-1491911889:6454..7371 | TCONS_00042437-exon-sc0003421-1491911889:6454..7371 | Clytia hemisphaerica | exon |
| TCONS_00042437-exon-sc0003421-1510915933:6454..7371 | TCONS_00042437-exon-sc0003421-1510915933:6454..7371 | Clytia hemisphaerica | exon |
| TCONS_00042437-exon-sc0003421-1575043694:6454..7371 | TCONS_00042437-exon-sc0003421-1575043694:6454..7371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003421 | supercontig | sc0003421:6454..7371 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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