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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042436 ID=TCONS_00042436|Name=TCONS_00042436|organism=Clytia hemisphaerica|type=transcript|length=1203bp
CTTGGTTAAACCTCTtatgaaaatttatcaatttttcctAGATTCTTGTG
TTTTTCCATCGAATTGGAAAAAAGCAAATGTTGTCcctgtttataaaaac
aaaggggACAAGAGTGTGTTGAAAAACTACAGGCCAGTATCTCTTCTAcc
tatttttggtaaaatctttgaaaaatgcatCTTTGACTCTGTTTACACct
attttgaaaacaacaatCTCTTTACTAATTCCCAGTCTGGTTTCCGCAAG
TGTGACTCTTGTGTGTCCCAGCTTTTGTCCATAACGCACGACATCCTGGT
AGGTTTCGATTCAAATCCACCTCTAGATACTCGTGGAgtatttcttgata
tttccaaagcttttgacCGAGTTTGGCATGATGGGctaattttcaaactt
aagtcatatggtGTGTCCGGGCCCCTTCTCTCATTACTTAAAAATTTTCT
CTCAGGTAGGTTGCAGCGGGTGGTTCTTGATGGCCAAGCTTCCAATTGGA
AGGAGGTCTTGGCCGGTGTACCCCAAGGCTCTATTCTAGGACCGCTCTTC
TTTCTGATATATATTAACGACCTCTCTGAAGGAATTATTTccatgatcaa
aatttttgctgatgacTCGTCAATATTCTCCCTTATCCTTGATCATATAC
GCTGTTCAAACGAATTGAATAGTGACATGCAGAAGGTTAGTGagtgggct
catcaatggaaaatGACCTTCAACCCTGATCCTTCTAAACAGNagtgggc
tcatcaatggaaaatGACCTTCAACCCTGATCCTTCTAAACAGGCTGTTG
AAGTGTACTTCACTCGGAGGATAAATCTACCTGATCCTCCAGAGATTTAT
TTTAACAACGCAGTCATTGCTCGACAAGATTATCAAAAACATCTTAGTCT
CATACTTGATCAAGAGCTGGCTTTTGACCGTcatcttgatgaaaaaatta
aaaaaaccaaTCAAGGTATTGGTTTTCTTTGTCGGCTTCGTGCATTCCTA
CCTAGGGATTCACTAGTCACGATATTTAAAACCCATATTAGACCACATCT
AGATTATGGAGATGTCGTGTATGATCGTCCAGGTAATTCCACTTTTTCTG
AAAAACTAGAATCAGTTCAATATGATGCTTGTCTTGCAATAACTGGATGT
TTCAGAGGAACATCCAGAGAAAAAGCTTAGTTTGGGTTCCTACCTCctgg
cgg Run BLAST on NCBI protein sequence of TCONS_00042436-protein >TCONS_00042436-protein ID=TCONS_00042436-protein|Name=TCONS_00042436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
LVKPLMKIYQFFLDSCVFPSNWKKANVVPVYKNKGDKSVLKNYRPVSLLP
IFGKIFEKCIFDSVYTYFENNNLFTNSQSGFRKCDSCVSQLLSITHDILV
GFDSNPPLDTRGVFLDISKAFDRVWHDGLIFKLKSYGVSGPLLSLLKNFL
SGRLQRVVLDGQASNWKEVLAGVPQGSILGPLFFLIYINDLSEGIISMIK
IFADDSSIFSLILDHIRCSNELNSDMQKVSEWAHQWKMTFNPDPSKQXWA
HQWKMTFNPDPSKQAVEVYFTRRINLPDPPEIYFNNAVIARQDYQKHLSL
ILDQELAFDRHLDEKIKKTNQGIGFLCRLRAFLPRDSLVTIFKTHIRPHL
DYGDVVYDRPGNSTFSEKLESVQYDACLAITGCFRGTSREKA Run BLAST on NCBI transcript from alignment at sc0003421:4346..5548 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042436 ID=TCONS_00042436|Name=TCONS_00042436|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at sc0003421:4346..5548 (Clytia hemisphaerica)
ccgccagGAGGTAGGAACCCAAACTAAGCTTTTTCTCTGGATGTTCCTCT
GAAACATCCAGTTATTGCAAGACAAGCATCATATTGAACTGATTCTAGTT
TTTCAGAAAAAGTGGAATTACCTGGACGATCATACACGACATCTCCATAA
TCTAGATGTGGTCTAATATGGGTTTTAAATATCGTGACTAGTGAATCCCT
AGGTAGGAATGCACGAAGCCGACAAAGAAAACCAATACCTTGAttggttt
ttttaattttttcatcaagatgACGGTCAAAAGCCAGCTCTTGATCAAGT
ATGAGACTAAGATGTTTTTGATAATCTTGTCGAGCAATGACTGCGTTGTT
AAAATAAATCTCTGGAGGATCAGGTAGATTTATCCTCCGAGTGAAGTACA
CTTCAACAGCCTGTTTAGAAGGATCAGGGTTGAAGGTCattttccattga
tgagcccactNCTGTTTAGAAGGATCAGGGTTGAAGGTCattttccattg
atgagcccactCACTAACCTTCTGCATGTCACTATTCAATTCGTTTGAAC
AGCGTATATGATCAAGGATAAGGGAGAATATTGACGAgtcatcagcaaaa
attttgatcatggAAATAATTCCTTCAGAGAGGTCGTTAATATATATCAG
AAAGAAGAGCGGTCCTAGAATAGAGCCTTGGGGTACACCGGCCAAGACCT
CCTTCCAATTGGAAGCTTGGCCATCAAGAACCACCCGCTGCAACCTACCT
GAGAGAAAATTTTTAAGTAATGAGAGAAGGGGCCCGGACACaccatatga
cttaagtttgaaaattagCCCATCATGCCAAACTCGgtcaaaagctttgg
aaatatcaagaaatacTCCACGAGTATCTAGAGGTGGATTTGAATCGAAA
CCTACCAGGATGTCGTGCGTTATGGACAAAAGCTGGGACACACAAGAGTC
ACACTTGCGGAAACCAGACTGGGAATTAGTAAAGAGattgttgttttcaa
aatagGTGTAAACAGAGTCAAAGatgcatttttcaaagattttaccaaaa
ataggTAGAAGAGATACTGGCCTGTAGTTTTTCAACACACTCTTGTcccc
tttgtttttataaacaggGACAACATTTGCTTTTTTCCAATTCGATGGAA
AAACACAAGAATCTaggaaaaattgataaattttcataAGAGGTTTAACC
AAG Coding sequence (CDS) from alignment at sc0003421:4346..5548 >TCONS_00042436 ID=TCONS_00042436|Name=TCONS_00042436|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0003421:4346..5548 (Clytia hemisphaerica)
CTAAGCTTTTTCTCTGGATGTTCCTCTGAAACATCCAGTTATTGCAAGAC
AAGCATCATATTGAACTGATTCTAGTTTTTCAGAAAAAGTGGAATTACCT
GGACGATCATACACGACATCTCCATAATCTAGATGTGGTCTAATATGGGT
TTTAAATATCGTGACTAGTGAATCCCTAGGTAGGAATGCACGAAGCCGAC
AAAGAAAACCAATACCTTGAttggtttttttaattttttcatcaagatgA
CGGTCAAAAGCCAGCTCTTGATCAAGTATGAGACTAAGATGTTTTTGATA
ATCTTGTCGAGCAATGACTGCGTTGTTAAAATAAATCTCTGGAGGATCAG
GTAGATTTATCCTCCGAGTGAAGTACACTTCAACAGCCTGTTTAGAAGGA
TCAGGGTTGAAGGTCattttccattgatgagcccactNCTGTTTAGAAGG
ATCAGGGTTGAAGGTCattttccattgatgagcccactCACTAACCTTCT
GCATGTCACTATTCAATTCGTTTGAACAGCGTATATGATCAAGGATAAGG
GAGAATATTGACGAgtcatcagcaaaaattttgatcatggAAATAATTCC
TTCAGAGAGGTCGTTAATATATATCAGAAAGAAGAGCGGTCCTAGAATAG
AGCCTTGGGGTACACCGGCCAAGACCTCCTTCCAATTGGAAGCTTGGCCA
TCAAGAACCACCCGCTGCAACCTACCTGAGAGAAAATTTTTAAGTAATGA
GAGAAGGGGCCCGGACACaccatatgacttaagtttgaaaattagCCCAT
CATGCCAAACTCGgtcaaaagctttggaaatatcaagaaatacTCCACGA
GTATCTAGAGGTGGATTTGAATCGAAACCTACCAGGATGTCGTGCGTTAT
GGACAAAAGCTGGGACACACAAGAGTCACACTTGCGGAAACCAGACTGGG
AATTAGTAAAGAGattgttgttttcaaaatagGTGTAAACAGAGTCAAAG
atgcatttttcaaagattttaccaaaaataggTAGAAGAGATACTGGCCT
GTAGTTTTTCAACACACTCTTGTcccctttgtttttataaacaggGACAA
CATTTGCTTTTTTCCAATTCGATGGAAAAACACAAGAATCTaggaaaaat
tgataaattttcataAGAGGTTTAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042436-exon-sc0003421-1491911889:4346..5548 | TCONS_00042436-exon-sc0003421-1491911889:4346..5548 | Clytia hemisphaerica | exon |
| TCONS_00042436-exon-sc0003421-1510915933:4346..5548 | TCONS_00042436-exon-sc0003421-1510915933:4346..5548 | Clytia hemisphaerica | exon |
| TCONS_00042436-exon-sc0003421-1575043694:4346..5548 | TCONS_00042436-exon-sc0003421-1575043694:4346..5548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003421 | supercontig | sc0003421:4346..5548 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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