TCONS_00042435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042435
Unique NameTCONS_00042435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042435 ID=TCONS_00042435|Name=TCONS_00042435|organism=Clytia hemisphaerica|type=transcript|length=239bp
TTGTAATTTAATTGTTTCTCAGATTCTTTTCCACTTATTAAATCAGTGAA
CTCAACTTCATAGAATCGTACAAAAACCTACGCTACCCTAAATAAATATC
AAGggttctttactcataagtcgtataatgaaaaaatcaataagaatttt
taaaaaagtatcATAGAAATGTAGCATTAGCCCGGGggaggtactagggt
tggcagatgaggggtatgtgcggacgggacctccgaaaa
Run BLAST on NCBI

transcript from alignment at sc0003419:7458..7696

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042435 ID=TCONS_00042435|Name=TCONS_00042435|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at sc0003419:7458..7696 (Clytia hemisphaerica)
ttttcggaggtcccgtccgcacatacccctcatctgccaaccctagtacc
tccCCCGGGCTAATGCTACATTTCTATgatacttttttaaaaattcttat
tgattttttcattatacgacttatgagtaaagaaccCTTGATATTTATTT
AGGGTAGCGTAGGTTTTTGTACGATTCTATGAAGTTGAGTTCACTGATTT
AATAAGTGGAAAAGAATCTGAGAAACAATTAAATTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026273XLOC_026273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042435-exon-sc0003419-1491911889:7458..7696TCONS_00042435-exon-sc0003419-1491911889:7458..7696Clytia hemisphaericaexon
TCONS_00042435-exon-sc0003419-1510915933:7458..7696TCONS_00042435-exon-sc0003419-1510915933:7458..7696Clytia hemisphaericaexon
TCONS_00042435-exon-sc0003419-1575043694:7458..7696TCONS_00042435-exon-sc0003419-1575043694:7458..7696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003419supercontigsc0003419:7458..7696 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.14038	13.37	7.53683	4.05003	3.6979	2.92213	3.52542	3.34815	1.56514	0.95407	4.63022	0.608744	1.8391	3.15654	2.59511	4.45591	3.45656	0.703297	1.9703	1.01675	4.41872	2.58636	20.9604	4.764	0	4.37921	1.27242	1.33759	7.10158	12.4035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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