TCONS_00042431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042431
Unique NameTCONS_00042431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042431 ID=TCONS_00042431|Name=TCONS_00042431|organism=Clytia hemisphaerica|type=transcript|length=542bp
GCAACTTAAATCGTTTTTAGTGACCAACATTCCACTGCAACTAACAAAAT
TGTcattgaatattgaatataGCTTTAAAGTGTGCNCACTGCAACTAACA
AAATTGTcattgaatattgaatataGTTTTAAAGTGTGCACGTCAACGTC
AAGGAAAACTGGGACCGACATAATGGTGACGTAattgtttttgatgacgt
cactggCTACATGGATAATTGTTTTTGTGACGTCGTTAAGTTTTTGTATT
CCTTGATACAGAGTTTCTCGATCATTTGAAGTGATGATAGAACATACCAT
CAACAGGTGACGATCAAAATCAACAACcagaatgacgtcatcatacgATT
TATGTTTTGCTGTTATGATTTCATCACAATCCTTATCATCCAGCCCCATG
ATGTACAAATGGTGTCGTGGATTGTAAGGTGTCAAATATTTCACATCTTT
GAACATTTTCATTTCGTCCAGTTTTTCTAACCAATCCCTGATGATTCGAT
TTTTTAGATAAAATGATGGCGGAAAATGTCGCTCCCTTGCGA
Run BLAST on NCBI

protein sequence of TCONS_00042431-protein

>TCONS_00042431-protein ID=TCONS_00042431-protein|Name=TCONS_00042431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
ARERHFPPSFYLKNRIIRDWLEKLDEMKMFKDVKYLTPYNPRHHLYIMGL
DDKDCDEIITAKHKSYDDVILVVDFDRHLLMVCSIITSNDRETLYQGIQK
LNDVTKTIIHVASDVIKNNYVTIMSVPVFLDVDVHTLKLYSIFNDNFVSC
SXHTLKLYSIFNDNFVSCSGMLVTKNDLSC
Run BLAST on NCBI

transcript from alignment at sc0003418:4377..4918

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042431 ID=TCONS_00042431|Name=TCONS_00042431|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at sc0003418:4377..4918 (Clytia hemisphaerica)
TCGCAAGGGAGCGACATTTTCCGCCATCATTTTATCTAAAAAATCGAATC
ATCAGGGATTGGTTAGAAAAACTGGACGAAATGAAAATGTTCAAAGATGT
GAAATATTTGACACCTTACAATCCACGACACCATTTGTACATCATGGGGC
TGGATGATAAGGATTGTGATGAAATCATAACAGCAAAACATAAATcgtat
gatgacgtcattctgGTTGTTGATTTTGATCGTCACCTGTTGATGGTATG
TTCTATCATCACTTCAAATGATCGAGAAACTCTGTATCAAGGAATACAAA
AACTTAACGACGTCACAAAAACAATTATCCATGTAGccagtgacgtcatc
aaaaacaatTACGTCACCATTATGTCGGTCCCAGTTTTCCTTGACGTTGA
CGTGCACACTTTAAAACtatattcaatattcaatgACAATTTTGTTAGTT
GCAGTGNGCACACTTTAAAGCtatattcaatattcaatgACAATTTTGTT
AGTTGCAGTGGAATGTTGGTCACTAAAAACGATTTAAGTTGC

Coding sequence (CDS) from alignment at sc0003418:4377..4918

>TCONS_00042431 ID=TCONS_00042431|Name=TCONS_00042431|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0003418:4377..4918 (Clytia hemisphaerica)
GCAAGGGAGCGACATTTTCCGCCATCATTTTATCTAAAAAATCGAATCAT
CAGGGATTGGTTAGAAAAACTGGACGAAATGAAAATGTTCAAAGATGTGA
AATATTTGACACCTTACAATCCACGACACCATTTGTACATCATGGGGCTG
GATGATAAGGATTGTGATGAAATCATAACAGCAAAACATAAATcgtatga
tgacgtcattctgGTTGTTGATTTTGATCGTCACCTGTTGATGGTATGTT
CTATCATCACTTCAAATGATCGAGAAACTCTGTATCAAGGAATACAAAAA
CTTAACGACGTCACAAAAACAATTATCCATGTAGccagtgacgtcatcaa
aaacaatTACGTCACCATTATGTCGGTCCCAGTTTTCCTTGACGTTGACG
TGCACACTTTAAAACtatattcaatattcaatgACAATTTTGTTAGTTGC
AGTGNGCACACTTTAAAGCtatattcaatattcaatgACAATTTTGTTAG
TTGCAGTGGAATGTTGGTCACTAAAAACGATTTAAGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026270XLOC_026270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042431-exon-sc0003418-1491911889:4377..4918TCONS_00042431-exon-sc0003418-1491911889:4377..4918Clytia hemisphaericaexon
TCONS_00042431-exon-sc0003418-1510915933:4377..4918TCONS_00042431-exon-sc0003418-1510915933:4377..4918Clytia hemisphaericaexon
TCONS_00042431-exon-sc0003418-1575043694:4377..4918TCONS_00042431-exon-sc0003418-1575043694:4377..4918Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042431-proteinTCONS_00042431-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003418supercontigsc0003418:4377..4918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0940944	0.164474	0.12063	0	0	1.10684	2.27515	1.5941	1.55341	1.34367	1.81341	0.698739	10.7022	5.99669	6.64817	9.01589	1.08285	6.6339	8.756	15.8487	6.7692	6.1703	5.87929	5.62425	9.52433	7.42235	43.0186	34.0964	32.8269	29.7156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top