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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042430 ID=TCONS_00042430|Name=TCONS_00042430|organism=Clytia hemisphaerica|type=transcript|length=1468bp
AACTTGAGTTCtctaaagaaattttttcttggaatttttctcaagaaaaa
agttcttctgaaaagttatcgaaagtaattttttcttcagaatATTCCTG
AGGCCTTCACAATggaattaaaacatttttttatttctattgtGGCTTTT
GaacaaaagctctatttatctGAATTGAATTAGCCAAGCGTGGCTCCAGC
AAATGCGAATTTACAAAAGTGTAATACGAGCGTAATATCTCTCTCTTAAA
AATTTATATGTGGTGTGATCGGaagacttttgaaaatggtaagaatattt
tttttagttttcctttatgatttcaaaatttgtataCATATTAGGGGCCA
AATCTTAAATCTGTTCCCCTAGAGCCCTAGAGGTAATTCTAGTTAAGcag
tttcattattttattcTTGTTTAATAAGTGTTATTGATTGTTTGCCAACC
TACTGGCGGGTGCTTATTTTGTTGTGCTTGTGTCTCATTGATTAACCTTT
CATTCCAATGCCCCAAAATCTCTAAAACCTTTACCATTAAGATCATGAAA
TTTTATCCATTTGTGTAAATGTAATTCAGTGCTTACTAGCCTTATGGCGG
GTGCTAATTTTGTTGTGCTTGTCAGCCTTCTGGCGGGTTAACCTTTTACT
CGAATGACCTAAaacttttacaaataaaattatcaaattttttctatttG
AGTAAACGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTTAACCTTTTAC
TCGAATGACCTAAaacttttacaaataaaattatcaaattttttctattt
GAGTAAACGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTGCTAATTTTG
TTGTGCTTGTCAGCCTTCTGGCGGGTTATCCTTTTACTCGAATGACTTAA
AACATCATGTTTCATCAgatttgtttgttgtttgtaaAATACGTAAGAca
tatttgtatattttttgtcCTTGCTTCAAGCTTCAATTAAGATCAGGGTT
AAAAAAATCGAAGTTTCTTTGTCGTTCtctcttttccttttttcaggacA
ACCGATGGTAACTGGACGCAGCTGACAGAAAACAACGTGACGATCATAGA
ACAGATAACGCCAAAAAAGCATCCAAGCTACCACAAGTTACCCACATTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAA
ATCATGTAGTATTTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAA
ATACAGAATACAACAGAAATTCATAATATTAATTGAATTGACCTTGAACT
AAAATGAGCAGCTACTGTTGTTTCGACAACAATAAGACAAATAAGCATtg
tagaaaataattttttaccgaagaaaatttcgaaaagaaaaatgcactaa
atattcaagaaaaaatta Run BLAST on NCBI transcript from alignment at sc0003418:1415..2882- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042430 ID=TCONS_00042430|Name=TCONS_00042430|organism=Clytia hemisphaerica|type=transcript|length=1468bp|location=Sequence derived from alignment at sc0003418:1415..2882- (Clytia hemisphaerica)
AACTTGAGTTCTCTAAAGAAATTTTTTCTTGGAATTTTTCTCAAGAAAAA
AGTTCTTCTGAAAAGTTATCGAAAGTAATTTTTTCTTCAGAATATTCCTG
AGGCCTTCACAATGGAATTAAAACATTTTTTTATTTCTATTGTGGCTTTT
GAACAAAAGCTCTATTTATCTGAATTGAATTAGCCAAGCGTGGCTCCAGC
AAATGCGAATTTACAAAAGTGTAATACGAGCGTAATATCTCTCTCTTAAA
AATTTATATGTGGTGTGATCGGAAGACTTTTGAAAATGGTAAGAATATTT
TTTTTAGTTTTCCTTTATGATTTCAAAATTTGTATACATATTAGGGGCCA
AATCTTAAATCTGTTCCCCTAGAGCCCTAGAGGTAATTCTAGTTAAGCAG
TTTCATTATTTTATTCTTGTTTAATAAGTGTTATTGATTGTTTGCCAACC
TACTGGCGGGTGCTTATTTTGTTGTGCTTGTGTCTCATTGATTAACCTTT
CATTCCAATGCCCCAAAATCTCTAAAACCTTTACCATTAAGATCATGAAA
TTTTATCCATTTGTGTAAATGTAATTCAGTGCTTACTAGCCTTATGGCGG
GTGCTAATTTTGTTGTGCTTGTCAGCCTTCTGGCGGGTTAACCTTTTACT
CGAATGACCTAAAACTTTTACAAATAAAATTATCAAATTTTTTCTATTTG
AGTAAACGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTTAACCTTTTAC
TCGAATGACCTAAAACTTTTACAAATAAAATTATCAAATTTTTTCTATTT
GAGTAAACGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTGCTAATTTTG
TTGTGCTTGTCAGCCTTCTGGCGGGTTATCCTTTTACTCGAATGACTTAA
AACATCATGTTTCATCAGATTTGTTTGTTGTTTGTAAAATACGTAAGACA
TATTTGTATATTTTTTGTCCTTGCTTCAAGCTTCAATTAAGATCAGGGTT
AAAAAAATCGAAGTTTCTTTGTCGTTCTCTCTTTTCCTTTTTTCAGGACA
ACCGATGGTAACTGGACGCAGCTGACAGAAAACAACGTGACGATCATAGA
ACAGATAACGCCAAAAAAGCATCCAAGCTACCACAAGTTACCCACATTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAA
ATCATGTAGTATTTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAA
ATACAGAATACAACAGAAATTCATAATATTAATTGAATTGACCTTGAACT
AAAATGAGCAGCTACTGTTGTTTCGACAACAATAAGACAAATAAGCATTG
TAGAAAATAATTTTTTACCGAAGAAAATTTCGAAAAGAAAAATGCACTAA
ATATTCAAGAAAAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042430-exon-sc0003418-1575043694:1415..2882 | TCONS_00042430-exon-sc0003418-1575043694:1415..2882 | Clytia hemisphaerica | exon |
| TCONS_00042430-exon-sc0003418-1510915933:1415..2882 | TCONS_00042430-exon-sc0003418-1510915933:1415..2882 | Clytia hemisphaerica | exon |
| TCONS_00042430-exon-sc0003418-1491911889:1415..2882 | TCONS_00042430-exon-sc0003418-1491911889:1415..2882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003418 | supercontig | sc0003418:1415..2882 - |
Blast
The following BLAST results are available for this feature:
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