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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042427 ID=TCONS_00042427|Name=TCONS_00042427|organism=Clytia hemisphaerica|type=transcript|length=271bp
NCTACACATACTAAACGTTCAAGTACAAACATTATTTTCTCGTCATTGGA
AGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAATATTG
AAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCC
CACATCGATGCAGCAGTAAAgaaTCTGCAACAATTCAGGACTAGACATTT
CGGATACGAACTTCGAGACACAGCAAGCAAGGGGAGAGTGACAATCGATG
GAACAAAATACGATTTTGGTG Run BLAST on NCBI transcript from alignment at sc0003418:7811..9390+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042427 ID=TCONS_00042427|Name=TCONS_00042427|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0003418:7811..9390+ (Clytia hemisphaerica)
NCTACACATACTAAACGTTCAAGTACAAACATTATTTTCTCGTCATTGGA
AGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAATATTG
AAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCC
CACATCGATGCAGCAGTAAAGTAAGTAGAATTTATTGTATATCGGTACTT
CATATACAATATTCACAGTAACCCTTACAACATAAGTGTTTTAGTATATT
CTCGAAAGTTTAATACTTACAACATAACCTACACTAAGTGCGTAACGTAA
AATCATTACTTCTTAAAAAGTCGAAGATACAGAGCACATATTGTCAGAAT
GATATCTTATCCCATAtcatattttatcacccgataACATCACCGTAAAT
AACTAGATTTGTGATACCAACGGAAgcatatattttgaaaacgcgttggt
ttttaaagaaagttatcttttcttattttttcaggaaTCTGCAACAATTC
AGGACTAGGTATATTATTTTccaatgatataattttcaaactGTCTTAAG
GGCCATGCCCTTTTTGTTAAGTATTTAAGGAGATGTAACTAGTTCAAACT
CTACCTCTAGTCTTTGAAGATTTTAGTTACCCGTTCAAAGCTTGTAAGGT
AACGAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTTGTTTATTC
ATTCAAGCATCGTCATTTNACCTTTTGATTGGCGGGAAGAGTGTTGTTTA
TTCATTCAAGCAtcgtcatttttttctataGCACAGAAACTAAACCTTAA
CTGTCTTCATGAAAAAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACT
GTATGGAGGGTGTCTTTTACACTCCGGGACTGAATTTTGATCGCAGCGCC
CTCTTATTGAGGAGAACGTGCTGGCATTTTCGGATTGGGTTCGCATTGTA
AATGGTGATATATGTACACGTAGGCGGTGGATAAATTAGCAAATAGGTTC
TTTAATACCAGAATTACGCAAGCCTCACTGTGCCATGGCTGGTTGTGCAT
CCTCGCCAATTGTCCCAAAATTAGAGAAGAACGGAGGTAAGCAGAATCTT
GAGCAAACTTTTACCTGTCTCAAAGCCATGTCTGTCGAGGGTAAAGGGAG
gcaacaccccttctcacagcccTACTGGGAATcctccccactggaaaaaa
tggccaaaatttggtccccactgaaaatagaTCAGACAAGCCAATCCTAA
CCGCAAAtcattgtgctattttttccaactgaattttcttgctcaaaaac
aatggaattcaaatcctcaGTCATGAGCaaaatgggaatatcaatccaca
TTGAATTTTGGTCCGCTTTTTTTACTCCCATTGGCTAAAaaaccgggtct
gtgagaagggtgtgtGAGGCAGGAAAAAAAGATTCAAACAGTAGGAAAAC
ACTCTTGCTTTCTGATTGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTG
TAGACATTTCGGATACGAACTTCGAGACACAGCAAGCAAGGGGAGAGTGA
CAATCGATGGAACAAAATACGATTTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042427-exon-sc0003418-1491911889:7811..7980 | TCONS_00042427-exon-sc0003418-1491911889:7811..7980 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1510915933:7811..7980 | TCONS_00042427-exon-sc0003418-1510915933:7811..7980 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1575043694:7811..7980 | TCONS_00042427-exon-sc0003418-1575043694:7811..7980 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1491911889:8295..8318 | TCONS_00042427-exon-sc0003418-1491911889:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1510915933:8295..8318 | TCONS_00042427-exon-sc0003418-1510915933:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1575043694:8295..8318 | TCONS_00042427-exon-sc0003418-1575043694:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1491911889:9314..9390 | TCONS_00042427-exon-sc0003418-1491911889:9314..9390 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1510915933:9314..9390 | TCONS_00042427-exon-sc0003418-1510915933:9314..9390 | Clytia hemisphaerica | exon |
| TCONS_00042427-exon-sc0003418-1575043694:9314..9390 | TCONS_00042427-exon-sc0003418-1575043694:9314..9390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003418 | supercontig | sc0003418:7811..9390 + |
Blast
The following BLAST results are available for this feature:
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