TCONS_00042423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042423
Unique NameTCONS_00042423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042423 ID=TCONS_00042423|Name=TCONS_00042423|organism=Clytia hemisphaerica|type=transcript|length=856bp
ATTGTTGATATAATTTGCTCTTTCTCAATATCCTTGACTTCATCCTGATT
GAGCTTGATTTGATTAACAGTCTTGGTTGGGAAGGTTTCCACTGATTCTT
TCTTCCATGGGAAACCATTGAACCATTTTGAAtcttgacaaatttcattc
aaggaTACACCTTTTCTTGTCCCGATATCAGCAATCATGTCTTGACTTTT
GACAAACCTCCAGTCATCAGGATTTGTGAAGCGATGAACTTCGTTGACAC
GGTTGCGGACATAGGGTTTCAATTGTTTGTCACTATGAAGCCAGAAAAGC
ACAATTTGGCTGTCTGTTAGCTTTAGTGAAGATTGATGATGCTTTTGAAA
TGCTCTTCTCACAACTTCACCAGTATGGGCGTTCAGAGTTGCAGCATATA
GTTCAGCTCGAGGTTGTGTGGTGCCATCTGGTACGAGCCTTGATCTCGAG
AAAACCAGACTTTCTTTTGAATCGTGCATATATTGATTGCAACACATGCA
ATATGCTTGGATGCATCACCAGTGTCGATTGTATCTAGTTCAAGGCTTGC
AGCATCTTCTGGAATGCAAGCTCTTCTGTACCTcacatttgaaatttctt
ccatCATAGCGAAATGGGACTCCCAAATTGGTTTGAAATCATCTGGAATT
CTGTCATCCCATCCAAGACCTCTATCCACAAGTTTGTGTAGGTCCAGTTT
CATACCTGCTGTGATGGGTGTTATCTTTCCTGTGATGTCATACAATTCTG
CCACCTTTGATACACATTGTCTTCTAGTTAGGTTCTTTGGGATATCCTTG
ATTGACATTGGTTTCTTCCCCCTAACTTTTGTTGCAAAGTTAAGTTCACT
GACATC
Run BLAST on NCBI

protein sequence of TCONS_00042423-protein

>TCONS_00042423-protein ID=TCONS_00042423-protein|Name=TCONS_00042423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MCCNQYMHDSKESLVFSRSRLVPDGTTQPRAELYAATLNAHTGEVVRRAF
QKHHQSSLKLTDSQIVLFWLHSDKQLKPYVRNRVNEVHRFTNPDDWRFVK
SQDMIADIGTRKGVSLNEICQDSKWFNGFPWKKESVETFPTKTVNQIKLN
QDEVKDIEKEQIIST
Run BLAST on NCBI

transcript from alignment at sc0003414:6163..7018

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042423 ID=TCONS_00042423|Name=TCONS_00042423|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at sc0003414:6163..7018 (Clytia hemisphaerica)
GATGTCAGTGAACTTAACTTTGCAACAAAAGTTAGGGGGAAGAAACCAAT
GTCAATCAAGGATATCCCAAAGAACCTAACTAGAAGACAATGTGTATCAA
AGGTGGCAGAATTGTATGACATCACAGGAAAGATAACACCCATCACAGCA
GGTATGAAACTGGACCTACACAAACTTGTGGATAGAGGTCTTGGATGGGA
TGACAGAATTCCAGATGATTTCAAACCAATTTGGGAGTCCCATTTCGCTA
TGatggaagaaatttcaaatgtgAGGTACAGAAGAGCTTGCATTCCAGAA
GATGCTGCAAGCCTTGAACTAGATACAATCGACACTGGTGATGCATCCAA
GCATATTGCATGTGTTGCAATCAATATATGCACGATTCAAAAGAAAGTCT
GGTTTTCTCGAGATCAAGGCTCGTACCAGATGGCACCACACAACCTCGAG
CTGAACTATATGCTGCAACTCTGAACGCCCATACTGGTGAAGTTGTGAGA
AGAGCATTTCAAAAGCATCATCAATCTTCACTAAAGCTAACAGACAGCCA
AATTGTGCTTTTCTGGCTTCATAGTGACAAACAATTGAAACCCTATGTCC
GCAACCGTGTCAACGAAGTTCATCGCTTCACAAATCCTGATGACTGGAGG
TTTGTCAAAAGTCAAGACATGATTGCTGATATCGGGACAAGAAAAGGTGT
AtccttgaatgaaatttgtcaagaTTCAAAATGGTTCAATGGTTTCCCAT
GGAAGAAAGAATCAGTGGAAACCTTCCCAACCAAGACTGTTAATCAAATC
AAGCTCAATCAGGATGAAGTCAAGGATATTGAGAAAGAGCAAATTATATC
AACAAT

Coding sequence (CDS) from alignment at sc0003414:6163..7018

>TCONS_00042423 ID=TCONS_00042423|Name=TCONS_00042423|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0003414:6163..7018 (Clytia hemisphaerica)
ATGTGTTGCAATCAATATATGCACGATTCAAAAGAAAGTCTGGTTTTCTC
GAGATCAAGGCTCGTACCAGATGGCACCACACAACCTCGAGCTGAACTAT
ATGCTGCAACTCTGAACGCCCATACTGGTGAAGTTGTGAGAAGAGCATTT
CAAAAGCATCATCAATCTTCACTAAAGCTAACAGACAGCCAAATTGTGCT
TTTCTGGCTTCATAGTGACAAACAATTGAAACCCTATGTCCGCAACCGTG
TCAACGAAGTTCATCGCTTCACAAATCCTGATGACTGGAGGTTTGTCAAA
AGTCAAGACATGATTGCTGATATCGGGACAAGAAAAGGTGTAtccttgaa
tgaaatttgtcaagaTTCAAAATGGTTCAATGGTTTCCCATGGAAGAAAG
AATCAGTGGAAACCTTCCCAACCAAGACTGTTAATCAAATCAAGCTCAAT
CAGGATGAAGTCAAGGATATTGAGAAAGAGCAAATTATATCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026264XLOC_026264Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042423-proteinTCONS_00042423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042423-exon-sc0003414-1491911889:6163..7018TCONS_00042423-exon-sc0003414-1491911889:6163..7018Clytia hemisphaericaexon
TCONS_00042423-exon-sc0003414-1510915933:6163..7018TCONS_00042423-exon-sc0003414-1510915933:6163..7018Clytia hemisphaericaexon
TCONS_00042423-exon-sc0003414-1575043694:6163..7018TCONS_00042423-exon-sc0003414-1575043694:6163..7018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003414supercontigsc0003414:6163..7018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9882	3.20811	4.0019	2.50616	1.78933	0.882076	1.37406	1.34678	0.432011	0.794127	1.72219	0.73838	1.09964	1.08062	0.573212	1.46834	1.0863	1.11011	1.74219	2.10993	0.920356	1.60396	1.90447	2.77341	3.41144	2.24852	1.38689	1.21715	1.7703	1.96343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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