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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042421 ID=TCONS_00042421|Name=TCONS_00042421|organism=Clytia hemisphaerica|type=transcript|length=1709bp
AGTAATTTGGCATCTCCATACGAGGATTTGAGACGTGTCCATATTTCATC
TATCTTATCAATTCCTTTGACAAGACTCAAGGCTGGACCGTCAAGGTAGT
TGTTTGTGAGAAGATCTGGGAGAACTGATGATGGTGTATTCTTCTTGTGT
AGTTTCTCAAAGTCGCTTTGGAAGGTGTAAATATCAATATCAGATTCATA
CCCTTTGAACTTTTGAAGCTTGATATTCAATTTCGATGATTGAAATTTCT
GTTGCTTGAGTACTTCATTGGTTGATGCTTCATGTTCAATGGTTGTAACG
TATTTTGTTCTTGAGTGCACAGAATTCATGATATGATTGGATGATTCCAT
CAACTTCACTGTGGTCTGCTTTGTGTGAGTTGACCAACATTCCTTTGACT
TGGAGGGCCATGTGATCCAGCTTCTTTGTGTAGTGGTTCAAGTTTGATTT
TGCATTGACCAATTCATCGTAGCTGAAGTTGGTCGGATCTTGGCTGAAGA
TGGTGCGTAATGTTGGGATGGAAGTTTTGATTTCAGTCATCAGGAACTTG
TGGGAATCCAACTGGATCTTCTGTAATTCACAATCTTCTACTTTTCTGTC
GTGTCGCAGAATTCTCATATGAATCTTGATCTTTTGAATGATTTCTCTGA
ATGAATCTGAAGTTTTGTTAAACCTTGTTGAGAAGATTTCAAGGTAGTTG
TTATCTCCAAGTGTTAGCTGCAATTCTGTATGGATTGTGCGAAATCGAGT
ACGAAGTGATTCAGCTTTGGATGTCAATAGTTCAGCCTCTGTAAGAGTAA
GTTCCTCAATGTCACTTTCCACAACCATGTCTTCAAGATCGTTTGCAATA
ACACactgttctatgttcaattgcTTTACCCTTTCCATTTCGACTGGTGT
TCTTTTGTTGAGGGTTGGAGTAGAAATTCTGGTGATTGGTGTAGataagt
ctgaccattgatacgtgaagtctgaccattgatacgtgaagtctgaccat
tgatacgtgaagtctgaccattgatacgtgaagtctgaccattgatacgt
gaagtctgaccattgatgggtgaagtctgaccattgatgggtgaagtcta
accattgatgggtgaagcctgaccattgatgggtgaagtctgaccattga
tggtTGACGTTGGAGCGTTGAATTGTGAGGTCAAAGGGTAGGTGTGTGAC
CAACCATGATGGGACCATGGATTGCTTTGATACAACATGGGAACACCTTG
ATGATACGCAggagcgccatgatgagacATAGGAGCGCCATGATGAAACA
TTGGAGCACCATGATGATACATTGGAGCGCCATGATGATACATTGGAGCG
CCTTGATGAGACGTATGAGCACCTTGATGAAACATTGGAGCACCTTGGTG
ATACATTGGAGCACCTTGATGATACATTGGAGCACCTTGATGAAACATTG
GAGCACCTTGATAAGACGTAGGAGCGCCATGATGAGATGTAGGAGCGCCA
TGATGATACGTAGGAGCACCTTGATGATATGTTGGAGCACCTTGATGATA
CGTAGGAGCACCTTGATGATATGTTggagcgccatgatgagacgttgaaG
CGCCATGTTGAGATgttgaagcgccatgatgagatgttgaagcgccatga
tgagacgttgaagcgccatgatgagatgttgaagcgccatgatgagacgt
tgaagcgcc Run BLAST on NCBI protein sequence of TCONS_00042421-protein >TCONS_00042421-protein ID=TCONS_00042421-protein|Name=TCONS_00042421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
RFNVSSWRFNISSWRFNVSSWRFNISSWRFNISTWRFNVSSWRSNISSRC
SYVSSRCSNISSRCSYVSSWRSYISSWRSYVLSRCSNVSSRCSNVSSRCS
NVSPRCSNVSSRCSYVSSRRSNVSSWRSNVSSWCSNVSSWRSYVSSWRSC
VSSRCSHVVSKQSMVPSWLVTHLPFDLTIQRSNVNHQWSDFTHQWSGFTH
QWLDFTHQWSDFTHQWSDFTYQWSDFTYQWSDFTYQWSDFTYQWSDFTYQ
WSDLSTPITRISTPTLNKRTPVEMERVKQLNIEQCVIANDLEDMVVESDI
EELTLTEAELLTSKAESLRTRFRTIHTELQLTLGDNNYLEIFSTRFNKTS
DSFREIIQKIKIHMRILRHDRKVEDCELQKIQLDSHKFLMTEIKTSIPTL
RTIFSQDPTNFSYDELVNAKSNLNHYTKKLDHMALQVKGMLVNSHKADHS
EVDGIIQSYHEFCALKNKIRYNH Run BLAST on NCBI transcript from alignment at sc0003414:1904..3612 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042421 ID=TCONS_00042421|Name=TCONS_00042421|organism=Clytia hemisphaerica|type=transcript|length=1709bp|location=Sequence derived from alignment at sc0003414:1904..3612 (Clytia hemisphaerica)
ggcgcttcaacgtctcatcatggcgcttcaacatctcatcatggcgcttc
aacgtctcatcatggcgcttcaacatctcatcatggcgcttcaacATCTC
AACATGGCGCttcaacgtctcatcatggcgctccAACATATCATCAAGGT
GCTCCTACGTATCATCAAGGTGCTCCAACATATCATCAAGGTGCTCCTAC
GTATCATCATGGCGCTCCTACATCTCATCATGGCGCTCCTACGTCTTATC
AAGGTGCTCCAATGTTTCATCAAGGTGCTCCAATGTATCATCAAGGTGCT
CCAATGTATCACCAAGGTGCTCCAATGTTTCATCAAGGTGCTCATACGTC
TCATCAAGGCGCTCCAATGTATCATCATGGCGCTCCAATGTATCATCATG
GTGCTCCAATGTTTCATCATGGCGCTCCTATgtctcatcatggcgctccT
GCGTATCATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATGGTCCCA
TCATGGTTGGTCACACACCTACCCTTTGACCTCACAATTCAACGCTCCAA
CGTCAaccatcaatggtcagacttcacccatcaatggtcaggcttcaccc
atcaatggttagacttcacccatcaatggtcagacttcacccatcaatgg
tcagacttcacgtatcaatggtcagacttcacgtatcaatggtcagactt
cacgtatcaatggtcagacttcacgtatcaatggtcagacttcacgtatc
aatggtcagacttatCTACACCAATCACCAGAATTTCTACTCCAACCCTC
AACAAAAGAACACCAGTCGAAATGGAAAGGGTAAAgcaattgaacataga
acagtGTGTTATTGCAAACGATCTTGAAGACATGGTTGTGGAAAGTGACA
TTGAGGAACTTACTCTTACAGAGGCTGAACTATTGACATCCAAAGCTGAA
TCACTTCGTACTCGATTTCGCACAATCCATACAGAATTGCAGCTAACACT
TGGAGATAACAACTACCTTGAAATCTTCTCAACAAGGTTTAACAAAACTT
CAGATTCATTCAGAGAAATCATTCAAAAGATCAAGATTCATATGAGAATT
CTGCGACACGACAGAAAAGTAGAAGATTGTGAATTACAGAAGATCCAGTT
GGATTCCCACAAGTTCCTGATGACTGAAATCAAAACTTCCATCCCAACAT
TACGCACCATCTTCAGCCAAGATCCGACCAACTTCAGCTACGATGAATTG
GTCAATGCAAAATCAAACTTGAACCACTACACAAAGAAGCTGGATCACAT
GGCCCTCCAAGTCAAAGGAATGTTGGTCAACTCACACAAAGCAGACCACA
GTGAAGTTGATGGAATCATCCAATCATATCATGAATTCTGTGCACTCAAG
AACAAAATACGTTACAACCATTGAACATGAAGCATCAACCAATGAAGTAC
TCAAGCAACAGAAATTTCAATCATCGAAATTGAATATCAAGCTTCAAAAG
TTCAAAGGGTATGAATCTGATATTGATATTTACACCTTCCAAAGCGACTT
TGAGAAACTACACAAGAAGAATACACCATCATCAGTTCTCCCAGATCTTC
TCACAAACAACTACCTTGACGGTCCAGCCTTGAGTCTTGTCAAAGGAATT
GATAAGATAGATGAAATATGGACACGTCTCAAATCCTCGTATGGAGATGC
CAAATTACT Coding sequence (CDS) from alignment at sc0003414:1904..3612 >TCONS_00042421 ID=TCONS_00042421|Name=TCONS_00042421|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0003414:1904..3612 (Clytia hemisphaerica)
cgcttcaacgtctcatcatggcgcttcaacatctcatcatggcgcttcaa
cgtctcatcatggcgcttcaacatctcatcatggcgcttcaacATCTCAA
CATGGCGCttcaacgtctcatcatggcgctccAACATATCATCAAGGTGC
TCCTACGTATCATCAAGGTGCTCCAACATATCATCAAGGTGCTCCTACGT
ATCATCATGGCGCTCCTACATCTCATCATGGCGCTCCTACGTCTTATCAA
GGTGCTCCAATGTTTCATCAAGGTGCTCCAATGTATCATCAAGGTGCTCC
AATGTATCACCAAGGTGCTCCAATGTTTCATCAAGGTGCTCATACGTCTC
ATCAAGGCGCTCCAATGTATCATCATGGCGCTCCAATGTATCATCATGGT
GCTCCAATGTTTCATCATGGCGCTCCTATgtctcatcatggcgctccTGC
GTATCATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATGGTCCCATC
ATGGTTGGTCACACACCTACCCTTTGACCTCACAATTCAACGCTCCAACG
TCAaccatcaatggtcagacttcacccatcaatggtcaggcttcacccat
caatggttagacttcacccatcaatggtcagacttcacccatcaatggtc
agacttcacgtatcaatggtcagacttcacgtatcaatggtcagacttca
cgtatcaatggtcagacttcacgtatcaatggtcagacttcacgtatcaa
tggtcagacttatCTACACCAATCACCAGAATTTCTACTCCAACCCTCAA
CAAAAGAACACCAGTCGAAATGGAAAGGGTAAAgcaattgaacatagaac
agtGTGTTATTGCAAACGATCTTGAAGACATGGTTGTGGAAAGTGACATT
GAGGAACTTACTCTTACAGAGGCTGAACTATTGACATCCAAAGCTGAATC
ACTTCGTACTCGATTTCGCACAATCCATACAGAATTGCAGCTAACACTTG
GAGATAACAACTACCTTGAAATCTTCTCAACAAGGTTTAACAAAACTTCA
GATTCATTCAGAGAAATCATTCAAAAGATCAAGATTCATATGAGAATTCT
GCGACACGACAGAAAAGTAGAAGATTGTGAATTACAGAAGATCCAGTTGG
ATTCCCACAAGTTCCTGATGACTGAAATCAAAACTTCCATCCCAACATTA
CGCACCATCTTCAGCCAAGATCCGACCAACTTCAGCTACGATGAATTGGT
CAATGCAAAATCAAACTTGAACCACTACACAAAGAAGCTGGATCACATGG
CCCTCCAAGTCAAAGGAATGTTGGTCAACTCACACAAAGCAGACCACAGT
GAAGTTGATGGAATCATCCAATCATATCATGAATTCTGTGCACTCAAGAA
CAAAATACGTTACAACCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042421-exon-sc0003414-1491911889:1904..3612 | TCONS_00042421-exon-sc0003414-1491911889:1904..3612 | Clytia hemisphaerica | exon |
| TCONS_00042421-exon-sc0003414-1510915933:1904..3612 | TCONS_00042421-exon-sc0003414-1510915933:1904..3612 | Clytia hemisphaerica | exon |
| TCONS_00042421-exon-sc0003414-1575043694:1904..3612 | TCONS_00042421-exon-sc0003414-1575043694:1904..3612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003414 | supercontig | sc0003414:1904..3612 . |
Blast
The following BLAST results are available for this feature:
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