|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042419 ID=TCONS_00042419|Name=TCONS_00042419|organism=Clytia hemisphaerica|type=transcript|length=2034bp
tctcGATTTATAATTCTGTTAGTAGAGTGTACGTAGCTGAAGTCTATGTT
CATATTCGTAGTTAGTAGATGAAAGATGTATGGAGCAACAGATTTGTTGT
GAATGATTTGTTTGAGTAGCCTAAGTCTTCTGCTATCTATGAGGGTGGTA
ATGTCAGCTAGGTTGTATAGTTTGTTCAGTAAGTTCCTTGATCGTTTAGA
TACACATTCTTGCTTGGGTATTAAGATGGTCAGCTTCTGATTTTGTAAGA
GTCACAAGTTCTAGACCGTATAGAAGTTTGGGTTCAACAATGCTATTGAA
TAGTGTAACAATCTGATTGGGATGACACAGTCGAATTTCAGCTGTGATAA
GTGAAGTTGCAACTGACCACATGCTAGCTATCCGGTCAGTCTTATGTCGG
TCGAGAGAGATAATGTTATTTTTCAGTTCCCAGTGAAATCCAAGGTGTTT
CAGTTCATTTTGTCTATAAATAATGGTCTCATTGATACGTATATAAGGAT
TTTGTAGGTAGTTTCCAGAAACAGTGAATTGAGTTTTGCTTTGGTTATAT
TTAAGACAGTTGCTGATGCCAGGGTTGATACATTGGTCGATCATTGTTTG
GAGATGTGAAAGGGTTGGACTCAATAGGATAATGTCATCTGTGTAAGCTA
TGATGGCGGTATGAAGATTGTTCGGAAGGTATGTGCCAATTTCGAGAGAC
CTGATGTGTTGAAGCAGATCTTCTGTATAAATGTTATAAAGAAATGGAGA
AAGAATGCCACCCTGACGAACACCCTGGGTTAGTGCGAGGGGCTTTGGTG
ATTGATGAGAAGCGTAATGGACCACTGCTGTCCCATTCAGATATAACTTT
ACAAGCGGGTTGACGAACCCGGAACAAAACCAAATTGTGAGAGTGCATGG
TCTCCAATTTCAGGACATTTCACCAGTACAACAAGTTCTAATAATTTAGT
AAGTATCGGGATTAGACTGATACCACGGTAATTGTTTGCATCGTTCATGG
ATTTCTTATATGATTTCACCAAAGGTATGAGAATTGATATAGTACCAGTG
GTCCACATTGGCACTGGCTGTCCTTTTACTTTAAATACTCTTCGCTGCGC
CTTACATGCCTTCTTAATGTTTTTACGTACAGTTCTTTTCTGTTTCGCGA
TTAACTTTCTCCTTCTTGATCGCTGACGTCGTTTTAATTGACTCAGTTCA
GTTCCTTTTACTTCAATAGTTCTCGTAGTCGTCTCCGTTGTAGGTTGTAT
TTCAtaataattaaaattttcttcgacGTTAAACAAACAGATTCTCTCTG
GCGAATGGTTAATATCTTCTGGAGACAATGGCTCAATGTCGCTGAATGTT
TCGTCTACATCGAACACGAATTCTTCAACCATCTCCATTGCGAATCGATT
TAGTAACTGACTTCTTTGTGCTTTTGAGCTTGATTCGTTTTCTAAATGTG
CACGGATAACTCCAAGGGCGTTTGCTTGCGCTCTTGCTAATTTGTCTTGA
TCTGGCATGTGTTCTCTTGATGTACGTCTTTTATGTTTAACAAAATGGTT
AAACCGAAATCAACAGTGTCTTTTTCTCTTGCCTGTCCTGTAAAACTACC
ATCCACCTCTCATTCGACTCAAGATACTTGGGGCCCTTACCTTAAAGCGT
CATGGAAGGGGGAAGGAGGGAAACATTTCAACTGTTTACTCTAACAGTTT
CCTACTGTCTTACCGACAGTTTTCTACGAGTGGTTACGCACTCTTTTACT
CTATCTTGCCACGGGAATAACTTAATATAGCGCTTCTTAGGACGGCTTAA
GACACTTAAAATTCAAAGGAGTGACACTTTCCCTCAGATGTCAAACTCCA
ACTGCATACTTCGTGGACTTGAAGGCACTCAGTACATACATCTAACACGT
TCTTAACAAAATGCACTCTATCCGGATTTATTTTAGAAGCTCAAATCATA
TTTTCAATCCATTTTGGTAATCTTCTTCGGGAGGACGTCACATATCATTC
TATAATCTTTCAACAACTTATAACGATAATTCGC Run BLAST on NCBI protein sequence of TCONS_00042419-protein >TCONS_00042419-protein ID=TCONS_00042419-protein|Name=TCONS_00042419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MPDQDKLARAQANALGVIRAHLENESSSKAQRSQLLNRFAMEMVEEFVFD
VDETFSDIEPLSPEDINHSPERICLFNVEENFNYYEIQPTTETTTRTIEV
KGTELSQLKRRQRSRRRKLIAKQKRTVRKNIKKACKAQRRVFKVKGQPVP
MWTTGTISILIPLVKSYKKSMNDANNYRGISLIPILTKLLELVVLVKCPE
IGDHALSQFGFVPGSSTRL Run BLAST on NCBI transcript from alignment at sc0003412:4116..6149 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042419 ID=TCONS_00042419|Name=TCONS_00042419|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at sc0003412:4116..6149 (Clytia hemisphaerica)
GCGAATTATCGTTATAAGTTGTTGAAAGATTATAGAATGATATGTGACGT
CCTCCCGAAGAAGATTACCAAAATGGATTGAAAATATGATTTGAGCTTCT
AAAATAAATCCGGATAGAGTGCATTTTGTTAAGAACGTGTTAGATGTATG
TACTGAGTGCCTTCAAGTCCACGAAGTATGCAGTTGGAGTTTGACATCTG
AGGGAAAGTGTCACTCCTTTGAATTTTAAGTGTCTTAAGCCGTCCTAAGA
AGCGCTATATTAAGTTATTCCCGTGGCAAGATAGAGTAAAAGAGTGCGTA
ACCACTCGTAGAAAACTGTCGGTAAGACAGTAGGAAACTGTTAGAGTAAA
CAGTTGAAATGTTTCCCTCCTTCCCCCTTCCATGACGCTTTAAGGTAAGG
GCCCCAAGTATCTTGAGTCGAATGAGAGGTGGATGGTAGTTTTACAGGAC
AGGCAAGAGAAAAAGACACTGTTGATTTCGGTTTAACCATTTTGTTAAAC
ATAAAAGACGTACATCAAGAGAACACATGCCAGATCAAGACAAATTAGCA
AGAGCGCAAGCAAACGCCCTTGGAGTTATCCGTGCACATTTAGAAAACGA
ATCAAGCTCAAAAGCACAAAGAAGTCAGTTACTAAATCGATTCGCAATGG
AGATGGTTGAAGAATTCGTGTTCGATGTAGACGAAACATTCAGCGACATT
GAGCCATTGTCTCCAGAAGATATTAACCATTCGCCAGAGAGAATCTGTTT
GTTTAACgtcgaagaaaattttaattattaTGAAATACAACCTACAACGG
AGACGACTACGAGAACTATTGAAGTAAAAGGAACTGAACTGAGTCAATTA
AAACGACGTCAGCGATCAAGAAGGAGAAAGTTAATCGCGAAACAGAAAAG
AACTGTACGTAAAAACATTAAGAAGGCATGTAAGGCGCAGCGAAGAGTAT
TTAAAGTAAAAGGACAGCCAGTGCCAATGTGGACCACTGGTACTATATCA
ATTCTCATACCTTTGGTGAAATCATATAAGAAATCCATGAACGATGCAAA
CAATTACCGTGGTATCAGTCTAATCCCGATACTTACTAAATTATTAGAAC
TTGTTGTACTGGTGAAATGTCCTGAAATTGGAGACCATGCACTCTCACAA
TTTGGTTTTGTTCCGGGTTCGTCAACCCGCTTGTAAAGTTATATCTGAAT
GGGACAGCAGTGGTCCATTACGCTTCTCATCAATCACCAAAGCCCCTCGC
ACTAACCCAGGGTGTTCGTCAGGGTGGCATTCTTTCTCCATTTCTTTATA
ACATTTATACAGAAGATCTGCTTCAACACATCAGGTCTCTCGAAATTGGC
ACATACCTTCCGAACAATCTTCATACCGCCATCATAGCTTACACAGATGA
CATTATCCTATTGAGTCCAACCCTTTCACATCTCCAAACAATGATCGACC
AATGTATCAACCCTGGCATCAGCAACTGTCTTAAATATAACCAAAGCAAA
ACTCAATTCACTGTTTCTGGAAACTACCTACAAAATCCTTATATACGTAT
CAATGAGACCATTATTTATAGACAAAATGAACTGAAACACCTTGGATTTC
ACTGGGAACTGAAAAATAACATTATCTCTCTCGACCGACATAAGACTGAC
CGGATAGCTAGCATGTGGTCAGTTGCAACTTCACTTATCACAGCTGAAAT
TCGACTGTGTCATCCCAATCAGATTGTTACACTATTCAATAGCATTGTTG
AACCCAAACTTCTATACGGTCTAGAACTTGTGACTCTTACAAAATCAGAA
GCTGACCATCTTAATACCCAAGCAAGAATGTGTATCTAAACGATCAAGGA
ACTTACTGAACAAACTATACAACCTAGCTGACATTACCACCCTCATAGAT
AGCAGAAGACTTAGGCTACTCAAACAAATCATTCACAACAAATCTGTTGC
TCCATACATCTTTCATCTACTAACTACGAATATGAACATAGACTTCAGCT
ACGTACACTCTACTAACAGAATTATAAATCgaga Coding sequence (CDS) from alignment at sc0003412:4116..6149 >TCONS_00042419 ID=TCONS_00042419|Name=TCONS_00042419|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0003412:4116..6149 (Clytia hemisphaerica)
ATGCCAGATCAAGACAAATTAGCAAGAGCGCAAGCAAACGCCCTTGGAGT
TATCCGTGCACATTTAGAAAACGAATCAAGCTCAAAAGCACAAAGAAGTC
AGTTACTAAATCGATTCGCAATGGAGATGGTTGAAGAATTCGTGTTCGAT
GTAGACGAAACATTCAGCGACATTGAGCCATTGTCTCCAGAAGATATTAA
CCATTCGCCAGAGAGAATCTGTTTGTTTAACgtcgaagaaaattttaatt
attaTGAAATACAACCTACAACGGAGACGACTACGAGAACTATTGAAGTA
AAAGGAACTGAACTGAGTCAATTAAAACGACGTCAGCGATCAAGAAGGAG
AAAGTTAATCGCGAAACAGAAAAGAACTGTACGTAAAAACATTAAGAAGG
CATGTAAGGCGCAGCGAAGAGTATTTAAAGTAAAAGGACAGCCAGTGCCA
ATGTGGACCACTGGTACTATATCAATTCTCATACCTTTGGTGAAATCATA
TAAGAAATCCATGAACGATGCAAACAATTACCGTGGTATCAGTCTAATCC
CGATACTTACTAAATTATTAGAACTTGTTGTACTGGTGAAATGTCCTGAA
ATTGGAGACCATGCACTCTCACAATTTGGTTTTGTTCCGGGTTCGTCAAC
CCGCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042419-exon-sc0003412-1491911889:4116..6149 | TCONS_00042419-exon-sc0003412-1491911889:4116..6149 | Clytia hemisphaerica | exon |
| TCONS_00042419-exon-sc0003412-1510915933:4116..6149 | TCONS_00042419-exon-sc0003412-1510915933:4116..6149 | Clytia hemisphaerica | exon |
| TCONS_00042419-exon-sc0003412-1575043694:4116..6149 | TCONS_00042419-exon-sc0003412-1575043694:4116..6149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003412 | supercontig | sc0003412:4116..6149 . |
Blast
The following BLAST results are available for this feature:
|
