TCONS_00042416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042416
Unique NameTCONS_00042416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042416 ID=TCONS_00042416|Name=TCONS_00042416|organism=Clytia hemisphaerica|type=transcript|length=196bp
GTATTCAAATCAATTTGTACAGTCTGATTTCTTAAGTTATGAAAATCAAT
CATTTTAGCATATTTTAGTTTGATCAGCAGCTTATCAATATTGTCCATGG
TGTCATCAAATTTCTGTTGCTGTTTAAACTCTTCCGGGTTGCCGTGTTTA
ATACCGTTTCTAGACTTCTGAGCATCCTTGATAATTGCTTTGGAAN
Run BLAST on NCBI

transcript from alignment at sc0003409:11825..12020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042416 ID=TCONS_00042416|Name=TCONS_00042416|organism=Clytia hemisphaerica|type=transcript|length=196bp|location=Sequence derived from alignment at sc0003409:11825..12020 (Clytia hemisphaerica)
NTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAACGGTATTAAA
CACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAATTTGATGACACCAT
GGACAATATTGATAAGCTGCTGATCAAACTAAAATATGCTAAAATGATTG
ATTTTCATAACTTAAGAAATCAGACTGTACAAATTGATTTGAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026257XLOC_026257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042416-exon-sc0003409-1491911889:11825..12020TCONS_00042416-exon-sc0003409-1491911889:11825..12020Clytia hemisphaericaexon
TCONS_00042416-exon-sc0003409-1510915933:11825..12020TCONS_00042416-exon-sc0003409-1510915933:11825..12020Clytia hemisphaericaexon
TCONS_00042416-exon-sc0003409-1575043694:11825..12020TCONS_00042416-exon-sc0003409-1575043694:11825..12020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003409supercontigsc0003409:11825..12020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	2.73797	8.49948	10.9483	6.15442	13.9049	0	3.01224	5.61683	12.8833	0	0	2.01944	1.83597	7.56402	13.5014	0	2.57742	5.86464	3.98343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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