TCONS_00042414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042414
Unique NameTCONS_00042414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042414 ID=TCONS_00042414|Name=TCONS_00042414|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TTTTAGTTGGCACAACTCTTGAACAATTACAAAATCAATTGAAGAAATTC
GAAGATAAGAACCAATATCTGGAAGATGAAATCAATCACCTTAAACGGAC
ACAACAAGTGTCAAATAAtcaaaatcagaaatcaaatgCACAGGAAAATG
TTGAATCGACATTGCATCCTTTTGGCTTTCACCAAGGGCACTTGCAGAAT
GATCATGTACCAATGATAAATCACCACAAAGGTGATTTTCACGAACAGAG
GCTAATGGGAATTCGTCAAGAAACGGAATATTATCGCCAACAACTTGAGC
TTGAACAGCTAAGACAGCAACTTCACAATCTGAGAGGACATCCTAACCAT
CCGGTTCTTCCATCAATCGGAACAACAATAACAGCCAACCATTATCCTAC
ACAGCAACAACATCCGCAACAGCATCCTTGGCAACAACACATACCATTAA
TGGTGGCCAATAATCAACATTTTAATGAGatttcaACGGAGAACAATTTG
TATTCAATGACACTTCATAAACGAGAAGAAGTATTCGAGAAAAGTCCCTA
CGATCCAACATCTGGGTTCACAATCTTCTGGGATTTTCTGCACGTGCCAA
CCACAACTGACCAATCAGAAAACAACAAGTACCATATCTCAGTAACTCTT
TACAAAGGACAAAATAAAGTCTCTGAGACAAGAAACCTACCAGTTCTACA
TCAAAACAATGGGAATGGATTACATGAACGTGCTTTTGGATTTGGTAATG
ATGAAACAACTCCAGGATTTGTGACGATAAGTGTGAAACAAGTTTTCCCC
AAGTGTTTTCCAAACGAGGACATATCACTGATCGTGTCATTACAAATCac
gaaaaatgacgtcattcataACAATGATGGTTTCCAAGACAACGATCAAC
CAATGAGATCATTACAAATGGGAGAATATGGTTGGTGCAAATTGACGCTT
TTTGATTCGTTCAATAGAGTCACGTGTGGAAGGTAATATTTCATGAAACA
GTGCAGTCCCAGCTggaacacaacgttgtttcgacgttcacctaacgtta
tatggacgttgtgaacattagatgaacgttgaaacgacgttgtgtg
Run BLAST on NCBI

transcript from alignment at sc0003407:82..8024+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042414 ID=TCONS_00042414|Name=TCONS_00042414|organism=Clytia hemisphaerica|type=transcript|length=7943bp|location=Sequence derived from alignment at sc0003407:82..8024+ (Clytia hemisphaerica)
TTTTAGTTGGCACAACTCTTGAACAATTACAAAATCAATTGAAGAAATTC
GAAGATAAGAACCAATATCTGGAAGATGAAATCAATCACCTTAAACGGAC
ACAACAAGTGTCAAATAAtcaaaatcagaaatcaaatgCACAGGTATATA
TGTTGTCTGTAAACAGTTCCAATATCTACggaaattatcaaaattcaaaa
ctctCTGTACTTACTACACTACGTTATACTCTTTAGTACACGAAGTAAGG
TATATGTTACAGAAGAGTTTTCTTACTCAGAAATCTTATTTTTAGATCTT
TCATAGAATCCAATCCCCTAAGGTCAGATAGGGCGAGggctaaattttct
tttcttttctatgcttttattgtttgaaatcttttttcaatactGGGGGT
TATTTCGATAGGGGATGGGGTACGTTTTGAGTAATCAAACTGGGGGCTGT
GCTAACAATTCAAATAATTTTCTTATATACTAGTatgcaaatttaaaaat
taatttagcTTGCCCTTATGTGATATACATCTTCttttaataagcaactc
caattcaCAGGGCTGCCGCTTAGCATTcttgctcattttctgaaaaattt
gctttgacccCTAATATTATACCATTTTTATGCTTATTCGGTCAAGGGCT
GTCGTTTGCCATGcttaaattatctaaaaaagCTTTTCGAGATAGCGAAA
ACAATGGGCTAATTTCAGGACTCGAGCCTTAACAacgtggttgcttataa
aaaatgtgtaatgtATCATGGAGATATATGGTAATAGGAAAAAACTTTAT
TACATTTAAGTgacctttttgatttttttgtttttgagaacTTTCGTCAA
CTAATTTTTGATCTTACGTTTCGTGGAGATGAGGGCTACATCCTTAAAAT
TTAACTGGGGGCTATTTTCACTAGCCCCTCCCCCCGAAAATTGACGGGAA
CTAGACCCCCTTCGTCATGTTATGTTAGTCCGTTGAGTACTTATTAGACT
ACTTAATCAAACTTAGTAAATATGTTATTGCATTTCAATGGAAATTAGGT
CTAGTAAACATTTTTCACACAATATTTTACATAAACTTTCTAGGAAAATG
TTGAATCGACATTGCATCCTTTTGGCTTTCACCAAGGTAACGACAATGTT
TAATTTATCAATTGGGattctttcaataaaatagaaaaaactgtCTAAAA
TTCCTAGGTTATTACTGTGCTATCCACCTCTAACTATCGACCCTATCTAT
CTNAACTATGTTTAATTCATCAATTAGGattctttcaataaaatagaaaa
aactgtCTAAAATTCCTAGGTTATTACTGTGCTATCCACCTCTAACTATC
GACCCTATCTATCTATCATTCCTCTAACTTCTACTATAGGGCACTTGCAT
AATGATCATGTACCAATGATAAATCACCACAAAGGTGATTTTCACGAACA
GAGGCTAATGNTAGGGCACTTGCAGAATGATCATGTACCAATGATAAATC
ACCACAAAGGTGATTTTCACGAACAGAGGCTAATGGGAATTCGTCAAGAA
ACGGAATATTATCGCCAACAACTTGAGCTTGAACAGCTAAGACAGGTAAA
CTAAGCCTGTAAAAAGAAAACTCAACTTAGAAAGAAGCTCTTTGTCACTT
TATATTGATAACAAATTGAACTTGCATTTAGAAATTACTTTTTTTGCCAA
CTCTTTGTTGAGCCACTCCTAAGAGAAGTACTTGGTCATACAATAAAAAT
GTATATTATGGGTGTTAGGAGCAGTACAGGCTAATCTTATTAGATTGTTT
gttaaaaatactcaaaatattTCCTCTTCTCAaacaacttttattttatt
tataccGATTTGATTTACAGCAACTTCACAATCTGAGAGGACATCCTAAC
CATCCGGTTCTTCCATCAATCGGAACAACAATAACAGCCAACCATTATCC
TACACAGCAACAACATCCGCAACAGCATCCTTGGCAACAACACATACCAT
TAATGGTGGCCAATAATCAACATTTTAATGAGGTACCTTCTTtcaagtgg
attaatttttgacTTGGACTTTTTACTAGCGAATGGAGGATCTGAAGTTC
TAACGTAGattaaattatgtaaaataagctctagtttagatggCTATCTA
TCTACCCTGTCTATTACACCTATCGTTACTTGCAGCGCGCTCAGGGACTG
GTAACGAAAATAAAAGGCAAATTCTTTTCAACGACGGTATCGAAAACACA
AGTGTGGAGCGCAGTTGTGAAAAATGTAAGCTTTAGTTTAGACAGCCGAC
TTGTCTAACTTAATTGCTAGAACAGGCAAAAAGTGGGTAGAATTGCAGTT
AATATCCTcccttgaaaatttttgaaataggccatttgcattgacgtcaa
aagaaagCCAATTCTCTACTCAATTCACATTTAGAGCATACAAGGTAAAA
GCCCTCTAAACCAGATAGAGCTAAACCAGATAGAGCTAAACCTTTGTTCA
ATcaatcattcattcattcattcattccctAGAGGCTTTGGCTAGTATTT
GAATCTTAGATCTTTCGCGAAGACTAATTTTGTGCGAAAATGGCCAAATG
ATTGGCCAAAATCGCAAAACGATGATAGGTTGATAGGTTGATAGGCGTGG
CTGTTTCGTTCTTAAAGCgaaccgtagtgcagtggtagagcatccggcta
cggttcgcaaggttgtgggttcaatccccagcccggtcataccaaagatt
tccaaaatggtacttgaagcctctctgcttgatgctcagcaattaagaga
aggatcaagggtaagtgaagAAATCCatggagaaagagtggcgccctccc
ctaccttcgggtagatagctatcgaaagaggagccatcGGGTCGCccccg
actgcggtcgcagacctACTTATTTACTTAAAGCGACAGAATTGAAGGTC
GTGAAGAGGAGGGAGTAGACGTATTTAGAGGGAAGTGATAAGGGTTAACA
GTACTGGAGGGTCAGTACTTAAAGCGACAGAATTGAGAGCGACAGAATTG
AAGGTCGTGAAGGGGAGGGAGTAGACGTATTTAGAGGGAAGTGATGAGGG
TTAACAGTACTGGAGGGTCAACAGTACTGGAGAGTCAGGCTCAAGAATGC
ATATTACTTAAATATGGACAAAGTATGGCGAAACTCTATTCGAACTGTTA
TACAACAGAAATGTTTTTCTAATGGGGCTAAATCAGTATCTCCCACCTCC
TATCTCCTACAAAGCTACTGGAATATATTGCGTAACAGGGGAAGGAATCA
GACTCCTTGAATACTTGCGTTCCCAAAAAATTGCCAACTTTAATGAGCTT
GATTGTAGAATATAccttttacagaatttcaaattaAAGTTGAATCTCaa
actttatattttgatatatttttaaaaaaatttctttagatttcaACGGA
GAACAATTTGTATTCAATGACACTTCATAAACGAGAAGAAGTATTCGAGA
AAAGTCCCTACGATCCAACGTAGGTTTGAATTATTTGCCGtacgctctct
aattcggttttcagggggggggggttgggtttcattgaataagggagcgc
gtatcgaatagtagaacgtcgaatagatcttatcggagtttttgattttt
ctaaaaaagcgatgcattgatTATGGGATTTCGGGAGtgttacaatagaa
ttccctcgagaaattcataagagatttctattgtaatactcccaaaacaa
tcccacaatgcatcggtcaaaatccgccaaattaagttcccgccaaatta
aatttttcaagttaaccgccAAATTAGATTCCCGCTAAATTTATGTTGCT
CTATTTTAtcccccaaatgtgtgctatttcaggctttaaaacaggttttc
cttttttaatggcgttttttggacaaaaatgtccttcgtccgccaaattt
aattcccaccaaatttaatttttcaagttaaccgccaaattaaattcccg
ccaaaatttcttcctttaatgtacaTTCCATTTCAGATCTGGGTTCACAA
TCTTCTGGGATTTTCTGCACGTGCCAACCACAACTGACCAATCAGAAAAC
AACAAGTACCATATCTCAGTAACTCTTTACAAAGGACAAAATAAAGTCTC
TGAGACAAGAAACCTACCAGTTCTACATCAAAACAATGGGAATGGATTAC
ATGAACGTGCTTTTGGATTTGGTAATGATGAAACAACTCCAGGATTTGTG
ACGATAAGTGTGAAACAAGTTTTCCCCAAGTGAGTAATACCGTAGTGTCA
TTACAAGCGATCTTGacaaacaaataaaatggaaggtTCCAGTAAAACGA
ACGACATTGAATGTTCTTGAACGTTCCTGAACATTTCTGATCATTCCCTT
TTATTTACTAGTTTAAGAATGTCTTAGAACATTCGAGAACGTTCCCAAAC
GTTTCCAAACGTCTTTATTGAGTCAAGCATTAACCTTTGGACGCAAAGGA
TCGTTCGCCAGCATTAAACGTTCTGAAACGTTACTGGACGATCTGGTTCT
GAAAGTTCTAAGAATTCTATGGAACGTTCAGTTACGTCTCAAAAACGCTC
CATTTTATTTGTACTAAAAATCGCGTGTAATGACACTAATGGTAATGTCG
ACATCTGGGAATAAGCTTGCAGCAGTATAGAGCGTGCATTGGGAActtta
attcttataatttttttctcacaaaatttAGCCTCAGTCTGCGCATTAGT
CTTACTTTCCATgggttttcaaaaaattttccccttCGCTTCTATATATT
CTGGGTACAGtacttttatatattttttaagctTAGCCTACTTCTTTTGG
CGGGAGATATCGAGTCAAACCCGGGCCCGTGAGAGAAAGATAACACCTTA
TCAATTTCACATTGGAATCTAAACAGCGTTTGggttaataaattttcaaa
gattgctcAAATTACTGCCTTTCTGACTGCTCATAAGTTTGATATCTTCT
GTGTCGGTGAGTCGTTTCTCGATTCCTCTATCGAGAGTGATGATTCGAGG
TTGAAGATAGAAAATTATGAGCTACTCAGATGTGACCACCCATCTAACTC
TAAAATAGGTGGTGTTTGTCTTTATTATAGAAGGGGTCTTTCTGTTGAGA
GAAGGCCTGAGNAATTTCTCATTGGAATCTAAACAACGTTTGggttaata
aattttcaaagatttctcaAATCACTGCCTTTCTGAGTGCTCACAAGTTT
GATATCTTCTGCGTCGGTGAGTCTTTTCTTGACTCCTCTATCGAGAGTGA
TGATTTGAGGTTAAAGATAGAAAATTATGAGCTACTCAGATGTGACCACC
CATCTAACTCTAAAATGGGTGGTGTAACTTGTCTTTATTATAGGAAGGGT
TTTTCTGTTGAGAGAAGACCCGAGTTGTTTTCTCTTGACGAGTGCCTTGT
TTGTGAAGTAAGATATGGTTcgaaaaaacttcttctttgtcttctcTACC
GGACTCCTAAAATAGTCAAAATGCAGACGAATTTTTTGCATTTAAACAAA
AATGGGaggaaacaatcaaaaacatttaTGACGTTTCTCCCACTCTATCT
ATTTTTCTTGGTGATTTCAACGCAAGAAATTCAGTATGGTGGACTGGTGA
TGTCACAAATTCTCAAGGAGAGGACATTAACGAATTAGCCCCGCAGTATG
GGTTACATCAACTGATTGACGAGCCAACTCACTTGAAGCCTGGGTGCTCT
CCATCCTGtatagatcttattttttcatcttcgcgaACACCTATTTTAGA
ATCTGGGGTTTTACCTTCCCCCAAGTCCCGTTGTCACCACCAGATACCTT
TTGTTAGAATAAACTATCAAATTAAACTATCACGTCAAATACTTTTTCGC
ATCAAGACGTCTTTTTTTAAGCTGGCGAATCTCGCAAGGAAAATGGagga
aaaaatcgatgaaaatgaccaagaaTTGCCGCTTGAAAATAGGTTTGCAC
CCAACAAAATACATTATTAGAgaaggaacaacaacaaaaGACACTCTGAC
CTGCAGGAAGTGCCATCGAGATGTTCATTATAACTGTTCCCAGCTACCAA
TCTACCAAATACAGATTTGCTTAACGTTTAAATCTAGAAGTTTCCAATGT
CAAAGTTACGTTAAGATCTCACCAGAGCTGATGGAACGAGTTGAAACATG
CAGAAACACCAAAATCGAGGGACttcaaaaggaaattaaagCATGTGAAA
ACAGCATGAAAgttcaaaatgaagaaatctCCCAACTGAAATCAAAGACC
TCAAcgttatttacaaaaaaaaatcaaagaaagcctGGAAACAAAGATGA
CCATACTCGAGAAGAAGATAGAAACAAATAATCGAAAAGAAGCAAGAGCT
GAAAGAGGTTAGTTATGCTGAAGCTGTATCCAAACAGATAAATCAACGAT
CAAATAAGGTGGAGAAAATGGCTCGAAGTGAAACAGTCGGCAAACAACGA
TCCACGGCATGCAATCTAATTTTCCATggaatcaaagaaaatttggagGA
TCCCGAAAATACAACGAAAATCTACGACGAGAAATTTATCAAGTGCAGAA
TCCTTGGATTACAACTGGGTATCAAGGACATAAAAATTGTAAACACACAG
AGGATTGGAGTATTCACGGAAGAGAGAGAGGAAGAAGGGAGGTATCGACC
AATCAAGGTAGTTTTCGAAAATGAAGAAGACAAGAACAAAGTCTTGAGAA
CCATCACGACATACAAAGGCCCTCCTTCATCCTATCGAGCAACAGAAGAC
CTCACAATTATTGAACGATTGACAATCAAAGAATTTAGCAAGAAAGCACG
CGAGCTCaatgctcaaatgaaagacaaaacTATTCAATTTAAAGTCAGGG
GAAGCTCCAAAACAAAATCATACCTAAAGAAAACTGTAACAACAAGCGTT
TGTAAAAAGATAGGTTCTTAGAGGCCCACGGCGCGCCTTGAACCTCaatc
ctttaataaataaataaataaattccctCCAGCTTATAAACgctaattta
ttttatttattcattctAATTCTTACCAACCGATCTTTATTCACGCTATA
AACTAAACTATGTTTGCCATCTTTATTGAAGTTTCCCATGTGACAAATGT
AGTTTTCCCTCAAGTAAGTATTAAACGAGATTTTGACTTCAGTTCATACC
GATTCATCTCTTTTCAAACCCTGTAAACTAAgatatatctgccatctttg
atttgaaTATTCCTTGTGACTTATGTAGTACGGTTTGACTTTGAGCAAAG
TTATGGTAGCAGTAAAGCAGCTCCTTTTCGTAACATTTTAGCGATGGTTT
TCCCTACTTATTTACAAAATTAGCCTgtgtaaaatttttaaatgtcTTTG
CAAAGTTTTGCCTCATTTTGACCGGGTTAAACAATTTtgacatttattga
caaaaaactCTCGGGATGTACATATGATTTTAATAAAGTCCATAATGTAA
CATAGCCGGGTAACTTAACCAAAGcatatcaatttttattttaaaacatg
TTTCGATATTTCATTATACATATGATTTTAGGAGACCTTGTCAGGGAATT
TCAAATCAAAGGCGTTAAAAATTCAAACTCGCATTTTTGAATCCGACAGG
TGTTTTCCAAACGAGGACATATCACTGATCGTGTCATTACAAATCacgaa
aaatgacgtcattcataACAATGATGGTTTCCAAGACAACGATCAACCAA
TGAGATCATTACAAATGGGAGAATATGGTTGGTGCAAATTGACGCTTTTT
GATTCGTTCAATAGAGTCACGTGTGGAAGGTAATATTTCATGAAACAGTG
CAGTCCCAGCTggaacacaacgttgtttcgacgttcacctaacgttatat
ggacgttgtgaacattagatgaacgttgaaacgacgttgtgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026255XLOC_026255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042414-exon-sc0003407-1491911889:82..224TCONS_00042414-exon-sc0003407-1491911889:82..224Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:82..224TCONS_00042414-exon-sc0003407-1510915933:82..224Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:82..224TCONS_00042414-exon-sc0003407-1575043694:82..224Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:1175..1217TCONS_00042414-exon-sc0003407-1491911889:1175..1217Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:1175..1217TCONS_00042414-exon-sc0003407-1510915933:1175..1217Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:1175..1217TCONS_00042414-exon-sc0003407-1575043694:1175..1217Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:1546..1676TCONS_00042414-exon-sc0003407-1491911889:1546..1676Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:1546..1676TCONS_00042414-exon-sc0003407-1510915933:1546..1676Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:1546..1676TCONS_00042414-exon-sc0003407-1575043694:1546..1676Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:1952..2113TCONS_00042414-exon-sc0003407-1491911889:1952..2113Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:1952..2113TCONS_00042414-exon-sc0003407-1510915933:1952..2113Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:1952..2113TCONS_00042414-exon-sc0003407-1575043694:1952..2113Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:3521..3600TCONS_00042414-exon-sc0003407-1491911889:3521..3600Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:3521..3600TCONS_00042414-exon-sc0003407-1510915933:3521..3600Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:3521..3600TCONS_00042414-exon-sc0003407-1575043694:3521..3600Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:4118..4360TCONS_00042414-exon-sc0003407-1491911889:4118..4360Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:4118..4360TCONS_00042414-exon-sc0003407-1510915933:4118..4360Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:4118..4360TCONS_00042414-exon-sc0003407-1575043694:4118..4360Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1491911889:7731..8024TCONS_00042414-exon-sc0003407-1491911889:7731..8024Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1510915933:7731..8024TCONS_00042414-exon-sc0003407-1510915933:7731..8024Clytia hemisphaericaexon
TCONS_00042414-exon-sc0003407-1575043694:7731..8024TCONS_00042414-exon-sc0003407-1575043694:7731..8024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003407supercontigsc0003407:82..8024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.510735	0.549257	0.579651	0.332298	12.308	10.6656	10.4257	10.1218	4.69067	6.96743	3.81795	5.39423	1.65352	2.21589	0.791588	1.44479	1.36426	1.74081	0.425182	1.07027	0.505105	0.594177	0.222581	0.598119	15.5009	13.9245	0.634713	1.48196	0.641871	0.361844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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