TCONS_00042412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042412
Unique NameTCONS_00042412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042412 ID=TCONS_00042412|Name=TCONS_00042412|organism=Clytia hemisphaerica|type=transcript|length=394bp
ACCTAGtctaatttttgctaaattcagcTCATTTCGAGACCTAGGAACAT
AAAATAACCTCATGAAGTTCTGTTCAATTGTTTATCAAACATTAATGATA
ACTTATTTGATGCTCAAAACCTTTTCAGGATCCAGAATCGAgcaaatatt
taacattttcgGTTAAATTGCTAAAATACTGCTCGTTTTTGGTCCATTTA
ACTATGACAAAGATCACAGAAAAGACTTTTTAAGCTTTGTGGATGATCCA
AGCATCAAATAGCGCCTAAATGAGCTATGAAATTACAATAACCTtcgggt
ttttaaattttagcatAAAGACATGGCCTTCAAGAACTCTAAGTCCAGTC
AATGCTAAATTTTTGCTCATAAAAGGACCCTGGAATGCTTTATA
Run BLAST on NCBI

transcript from alignment at sc0003405:9836..10229

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042412 ID=TCONS_00042412|Name=TCONS_00042412|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0003405:9836..10229 (Clytia hemisphaerica)
TATAAAGCATTCCAGGGTCCTTTTATGAGCAAAAATTTAGCATTGACTGG
ACTTAGAGTTCTTGAAGGCCATGTCTTTatgctaaaatttaaaaacccga
AGGTTATTGTAATTTCATAGCTCATTTAGGCGCTATTTGATGCTTGGATC
ATCCACAAAGCTTAAAAAGTCTTTTCTGTGATCTTTGTCATAGTTAAATG
GACCAAAAACGAGCAGTATTTTAGCAATTTAACcgaaaatgttaaatatt
tgcTCGATTCTGGATCCTGAAAAGGTTTTGAGCATCAAATAAGTTATCAT
TAATGTTTGATAAACAATTGAACAGAACTTCATGAGGTTATTTTATGTTC
CTAGGTCTCGAAATGAgctgaatttagcaaaaattagaCTAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026254XLOC_026254Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042412-exon-sc0003405-1491911889:9836..10229TCONS_00042412-exon-sc0003405-1491911889:9836..10229Clytia hemisphaericaexon
TCONS_00042412-exon-sc0003405-1510915933:9836..10229TCONS_00042412-exon-sc0003405-1510915933:9836..10229Clytia hemisphaericaexon
TCONS_00042412-exon-sc0003405-1575043694:9836..10229TCONS_00042412-exon-sc0003405-1575043694:9836..10229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003405supercontigsc0003405:9836..10229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.855525	1.96736	1.90024	2.01643	0.321397	0	0.53436	1.40286	0.579426	0.449545	1.03562	0.179465	0	0.480961	0.130308	0.250486	0	0.354999	0.283257	0	2.92786	1.8655	1.56128	0.764399	0	0.39504	0.976454	2.18312	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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