TCONS_00042410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042410
Unique NameTCONS_00042410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042410 ID=TCONS_00042410|Name=TCONS_00042410|organism=Clytia hemisphaerica|type=transcript|length=618bp
ATCACAATGTGGAAAATAACATCCCAGCCAAACCACCACCCGATAAACTC
TCATCAAACATCACCAGTCCTTCATCCACGTGTGCTTCTATTCAGCTAGA
TTATCCTTTTAGTTATAATatcaataataataacaataacactACAAATA
ATACACTACCAGTCTCATCAGTAGATCACAGACAGTACTTATACGATTTA
GCTATCAACGTTGATAATTATAAACCCTCATCTGTGCAAGCAACTTCATT
ATTTAATACTTTATCGAATGCCAAGAGGAGCATCAATTTGAACGAAACAA
CACAAAATGGTTTACATAATAAACAAAGAACGACATGTGACATTGAAAGA
TCGATAAATTATAATGGTGATACttttaatgataaaattttaccAAGGAA
TCATAATATTCGGAATAATAAAAGCCCATCTGATGGTGACATTACCAAAA
ATGGGGTTCCGAACGGCCATCATGGACCTTTAAGACCTCTATCCTTAGAT
CTAACAGAAACGACACGTCAGATACTGCCGAGGTTATCACCGATTAGAGA
CTCAGACAATTTGAAGTCAGTTTTCAGTACGAAGCCCATGATATCGTCAA
GTTTAAGTATGAATGGAA
Run BLAST on NCBI

protein sequence of TCONS_00042410-protein

>TCONS_00042410-protein ID=TCONS_00042410-protein|Name=TCONS_00042410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
HNVENNIPAKPPPDKLSSNITSPSSTCASIQLDYPFSYNINNNNNNTTNN
TLPVSSVDHRQYLYDLAINVDNYKPSSVQATSLFNTLSNAKRSINLNETT
QNGLHNKQRTTCDIERSINYNGDTFNDKILPRNHNIRNNKSPSDGDITKN
GVPNGHHGPLRPLSLDLTETTRQILPRLSPIRDSDNLKSVFSTKPMISSS
LSMNG
Run BLAST on NCBI

transcript from alignment at sc0003403:7421..8038

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042410 ID=TCONS_00042410|Name=TCONS_00042410|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0003403:7421..8038 (Clytia hemisphaerica)
TTCCATTCATACTTAAACTTGACGATATCATGGGCTTCGTACTGAAAACT
GACTTCAAATTGTCTGAGTCTCTAATCGGTGATAACCTCGGCAGTATCTG
ACGTGTCGTTTCTGTTAGATCTAAGGATAGAGGTCTTAAAGGTCCATGAT
GGCCGTTCGGAACCCCATTTTTGGTAATGTCACCATCAGATGGGCTTTTA
TTATTCCGAATATTATGATTCCTTggtaaaattttatcattaaaaGTATC
ACCATTATAATTTATCGATCTTTCAATGTCACATGTCGTTCTTTGTTTAT
TATGTAAACCATTTTGTGTTGTTTCGTTCAAATTGATGCTCCTCTTGGCA
TTCGATAAAGTATTAAATAATGAAGTTGCTTGCACAGATGAGGGTTTATA
ATTATCAACGTTGATAGCTAAATCGTATAAGTACTGTCTGTGATCTACTG
ATGAGACTGGTAGTGTATTATTTGTagtgttattgttattattattgatA
TTATAACTAAAAGGATAATCTAGCTGAATAGAAGCACACGTGGATGAAGG
ACTGGTGATGTTTGATGAGAGTTTATCGGGTGGTGGTTTGGCTGGGATGT
TATTTTCCACATTGTGAT

Coding sequence (CDS) from alignment at sc0003403:7421..8038

>TCONS_00042410 ID=TCONS_00042410|Name=TCONS_00042410|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0003403:7421..8038 (Clytia hemisphaerica)
TCCATTCATACTTAAACTTGACGATATCATGGGCTTCGTACTGAAAACTG
ACTTCAAATTGTCTGAGTCTCTAATCGGTGATAACCTCGGCAGTATCTGA
CGTGTCGTTTCTGTTAGATCTAAGGATAGAGGTCTTAAAGGTCCATGATG
GCCGTTCGGAACCCCATTTTTGGTAATGTCACCATCAGATGGGCTTTTAT
TATTCCGAATATTATGATTCCTTggtaaaattttatcattaaaaGTATCA
CCATTATAATTTATCGATCTTTCAATGTCACATGTCGTTCTTTGTTTATT
ATGTAAACCATTTTGTGTTGTTTCGTTCAAATTGATGCTCCTCTTGGCAT
TCGATAAAGTATTAAATAATGAAGTTGCTTGCACAGATGAGGGTTTATAA
TTATCAACGTTGATAGCTAAATCGTATAAGTACTGTCTGTGATCTACTGA
TGAGACTGGTAGTGTATTATTTGTagtgttattgttattattattgatAT
TATAACTAAAAGGATAATCTAGCTGAATAGAAGCACACGTGGATGAAGGA
CTGGTGATGTTTGATGAGAGTTTATCGGGTGGTGGTTTGGCTGGGATGTT
ATTTTCCACATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026252XLOC_026252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042410-proteinTCONS_00042410-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042410-exon-sc0003403-1491911889:7421..8038TCONS_00042410-exon-sc0003403-1491911889:7421..8038Clytia hemisphaericaexon
TCONS_00042410-exon-sc0003403-1510915933:7421..8038TCONS_00042410-exon-sc0003403-1510915933:7421..8038Clytia hemisphaericaexon
TCONS_00042410-exon-sc0003403-1575043694:7421..8038TCONS_00042410-exon-sc0003403-1575043694:7421..8038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003403supercontigsc0003403:7421..8038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08225	1.51442	1.59866	1.05341	1.03064	0.45779	0.435171	0.795868	0.192384	0	0.317312	0	0.820004	0.321018	0.66884	1.53875	1.31362	0.616526	1.2998	0.771633	1.67135	0.801803	0.969516	0.775395	0.389995	0.536737	0.475038	0.615354	0.232888	1.08061
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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