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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042405 ID=TCONS_00042405|Name=TCONS_00042405|organism=Clytia hemisphaerica|type=transcript|length=278bp
ACTAACACCTgctttgaaaaagatttcagcTCTCAAAACTGTTATATTTT
TAGGGTGGAGCAAATTGCGTGAAATTCAGCCGAAATGGCGAATATTTTGC
TTCTGGCAGTTCCGACGAACAGgttaTGGTATGGAAAACAAATTTCGACA
CCATTGATTATTCGCAAGTTCTTCACGCCCACCGTAAGCGAAGTGCAACG
CCCTCAAGCCACACGCCCACCGCCTCTGTAGACGCCCGATCAACGAATAG
AACTATTGATGAAGACTCGACTGCGGta Run BLAST on NCBI transcript from alignment at sc0003400:94..2192+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042405 ID=TCONS_00042405|Name=TCONS_00042405|organism=Clytia hemisphaerica|type=transcript|length=2099bp|location=Sequence derived from alignment at sc0003400:94..2192+ (Clytia hemisphaerica)
ACTAACACCTgctttgaaaaagatttcagcTCTCAAAACTGTTATATTTT
TAGGGTGGAGCAAATTGCGTGAAATTCAGCCGAAATGGCGAATATTTTGC
TTCTGGCAGTTCCGACGAACAGGTGCTCTTGCTTTGAAAGAATTTTATTA
GCTTTTATTTTGTTAGTTCTGCCTTACCTTATCCtctctttaacccttta
actgctgtgcgtattttttaaggttcgacctatttgccggcCTATTTTTT
atcagccaaggactataattttgagttaaacattgtagaatagttatttt
tcaacatagaaaagtttttaactattcattttttttttcatatttcaaac
cATCAAAtggaaaaatcttgtaaaaaatgataaattttcggcaaataggt
cgaaatTTCGCATGTCGGCAGATCCCGACAATGGCaaggaaataaaaaat
gctaatgtcggcatatgccgacatcggcacggaaagggttaagggATCAT
CTATTTGCAGATCTATGAACTGCTGAAACCGTCTAAGAAAGATCCTTAGC
CAtctatctgatattccgatggtggaTTGGCGGCTGTCTACGCTAAAGCC
TTAAAGGAGTGGGCAATtccccatcggagaggaatgatagtcggcctttg
attatcccgaccttcagagctttaacGTGTCGGATGAAACTTTCTGCATC
TGGGTGTCAGATAAGTCCTCAGCATATCATGTTCAATCGTTTTCCACAGT
TTAAAGTAGAGATATTAATAAGGTATATTCATACAAATATTTATAAAAGA
ACCCATTTCCTTGAGATTTCAAAATCTGTTAGCCAGGGAGATATACTAAT
ttacttgtttttgttttttttaggttaTGGTATGGAAAACAAATTTCGAC
ACCATTGATTATTCGCAAGGTAACGATAAAAATACTCTAGCCTTTTTCCT
CTAAAATACACAGGCTTTTCCCATAAATGAACGATAATAAAATtcgtcat
ttattttttaactttgaccAAAGTGAAAGGtaaaatacactcttctcgaa
aTACATAAGATAATTGCTAACCTCGTTCTCAAAAACTTGTCGCTGCGATA
TTTTAACGTCGCCAGACATAAGACATAATTTTATTAATGTTGCAACTGTT
TTATATCGAAATTGAAAGCAGTCTTTTGGGAAAACGTATAACATGCGCAA
ATGTCGTTTGATGTaattatttcatttgaaaacgaggcatgtgtgtactc
ttaggttccaaataaatggGGGGATCCTGATAAGGtctgggggttggaaa
attttcgaaaaattaacaagttgGGGGGGGGCTTTATTTGGAATCTAAGA
GCCATGATGTTCATTTATCTCGAGAagtgtaagtaagtaagtttaaCTTT
ACGAACAGATTATGTAGTAGGatgtgtacacgttttttataagaacaaac
catataagaacataaggcttcgatagccaaaatgttaagaacaagttaag
aacatgttaaggctttgcggactctaaaacaccgaatttcttaggaaaag
ggacaaaaatattcacaaaatggtgaaataagaacatgttaagaacattt
ttaggcttgaaactcaaaaagttaagaacacacACCAGTCTTTAATCCTT
ATTATATATTAGGGCTGATTAAGGCCGTGAGATCACTCCCTTAATTTTTA
ATAAGGTGattaaaaagatttcaaatttgaaaaattgctatttgaaacaa
aaggaaatatttagctgacattttttgaattaattaaAGCCTTCCACTTT
TCATCATCCGCCCCTCCCTAAAGCCTTTCACTTTTGTATAAAACCTGAAA
ACCTGCCGTGAAAAGAATATTGAAACACACCAggaaaaagtaaaagtaaa
agctCACTGTCTTGAAAATCTTGCCAAAATGGTCAAGTTATCACGCATGT
ATTCTGAATGTCACCGCCACGAAAATTTCAACATTACAGTTCTTCACGCC
CACCGTAAGCGAAGTGCAACGCCCTCAAGCCACACGCCCACCGCCTCTGT
AGACGCCCGATCAACGAATAGAACTATTGATGAAGACTCGACTGCGGta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042405-exon-sc0003400-1491911889:94..215 | TCONS_00042405-exon-sc0003400-1491911889:94..215 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1510915933:94..215 | TCONS_00042405-exon-sc0003400-1510915933:94..215 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1575043694:94..215 | TCONS_00042405-exon-sc0003400-1575043694:94..215 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1491911889:967..1012 | TCONS_00042405-exon-sc0003400-1491911889:967..1012 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1510915933:967..1012 | TCONS_00042405-exon-sc0003400-1510915933:967..1012 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1575043694:967..1012 | TCONS_00042405-exon-sc0003400-1575043694:967..1012 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1491911889:2083..2192 | TCONS_00042405-exon-sc0003400-1491911889:2083..2192 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1510915933:2083..2192 | TCONS_00042405-exon-sc0003400-1510915933:2083..2192 | Clytia hemisphaerica | exon |
| TCONS_00042405-exon-sc0003400-1575043694:2083..2192 | TCONS_00042405-exon-sc0003400-1575043694:2083..2192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003400 | supercontig | sc0003400:94..2192 + |
Blast
The following BLAST results are available for this feature:
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